Hb_001268_110

Information

Type -
Description -
Location Contig1268: 94806-100757
Sequence    

Annotation

kegg
ID rcu:RCOM_1446150
description hypothetical protein
nr
ID XP_012067314.1
description PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]
swissprot
ID Q5RBA3
description Protein FAM214B OS=Pongo abelii GN=FAM214B PE=2 SV=1
trembl
ID A0A067L083
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08096: 96280-100549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_110 0.0 - - PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]
2 Hb_028227_070 0.0877820342 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
3 Hb_000890_210 0.0884600219 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
4 Hb_004607_050 0.0935437282 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
5 Hb_000866_170 0.0957144759 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000999_050 0.1024577196 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
7 Hb_000185_040 0.1026024271 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
8 Hb_172632_110 0.102782865 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
9 Hb_008770_040 0.1060932833 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Malus domestica]
10 Hb_011485_070 0.1099306894 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
11 Hb_000665_060 0.1100901943 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
12 Hb_010142_030 0.1103360662 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_002481_080 0.1103519691 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
14 Hb_003370_050 0.1108788474 - - PREDICTED: uncharacterized protein LOC103697550 [Phoenix dactylifera]
15 Hb_001341_170 0.1122922304 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
16 Hb_050454_010 0.1123982403 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
17 Hb_001761_130 0.1125715241 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
18 Hb_006642_040 0.1128191208 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
19 Hb_155159_020 0.113449224 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
20 Hb_011016_050 0.1136108098 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_110 Hb_001268_110 Hb_028227_070 Hb_028227_070 Hb_001268_110--Hb_028227_070 Hb_000890_210 Hb_000890_210 Hb_001268_110--Hb_000890_210 Hb_004607_050 Hb_004607_050 Hb_001268_110--Hb_004607_050 Hb_000866_170 Hb_000866_170 Hb_001268_110--Hb_000866_170 Hb_000999_050 Hb_000999_050 Hb_001268_110--Hb_000999_050 Hb_000185_040 Hb_000185_040 Hb_001268_110--Hb_000185_040 Hb_002481_080 Hb_002481_080 Hb_028227_070--Hb_002481_080 Hb_000504_070 Hb_000504_070 Hb_028227_070--Hb_000504_070 Hb_001016_120 Hb_001016_120 Hb_028227_070--Hb_001016_120 Hb_010964_040 Hb_010964_040 Hb_028227_070--Hb_010964_040 Hb_001584_120 Hb_001584_120 Hb_028227_070--Hb_001584_120 Hb_155159_020 Hb_155159_020 Hb_028227_070--Hb_155159_020 Hb_000107_490 Hb_000107_490 Hb_000890_210--Hb_000107_490 Hb_001341_170 Hb_001341_170 Hb_000890_210--Hb_001341_170 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310 Hb_000245_040 Hb_000245_040 Hb_000890_210--Hb_000245_040 Hb_004607_050--Hb_000999_050 Hb_004607_050--Hb_000866_170 Hb_005490_030 Hb_005490_030 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_004607_050--Hb_000185_040 Hb_006938_080 Hb_006938_080 Hb_004607_050--Hb_006938_080 Hb_000866_170--Hb_000245_040 Hb_000297_010 Hb_000297_010 Hb_000866_170--Hb_000297_010 Hb_000395_190 Hb_000395_190 Hb_000866_170--Hb_000395_190 Hb_000866_170--Hb_000890_210 Hb_004724_150 Hb_004724_150 Hb_000866_170--Hb_004724_150 Hb_000866_170--Hb_001341_170 Hb_004994_220 Hb_004994_220 Hb_000999_050--Hb_004994_220 Hb_004837_130 Hb_004837_130 Hb_000999_050--Hb_004837_130 Hb_002740_180 Hb_002740_180 Hb_000999_050--Hb_002740_180 Hb_000999_050--Hb_006938_080 Hb_001009_170 Hb_001009_170 Hb_000999_050--Hb_001009_170 Hb_011485_070 Hb_011485_070 Hb_000185_040--Hb_011485_070 Hb_000185_040--Hb_002740_180 Hb_001377_490 Hb_001377_490 Hb_000185_040--Hb_001377_490 Hb_000318_290 Hb_000318_290 Hb_000185_040--Hb_000318_290 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.16276 7.69782 3.26985 11.916 6.56744 12.8114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.11652 8.02732 15.5321 16.6588 5.60847

CAGE analysis