Hb_001268_120

Information

Type -
Description -
Location Contig1268: 112803-123362
Sequence    

Annotation

kegg
ID rcu:RCOM_1446180
description hypothetical protein
nr
ID XP_002512882.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22799
description Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=4 SV=2
trembl
ID B9RH23
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1446180 PE=4 SV=1
Gene Ontology
ID GO:0005737
description hydroxyproline-rich glycoprotein family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08100: 113082-113393 , PASA_asmbl_08101: 113765-113980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000699_230 0.1199131028 - - Ankyrin repeat family protein, putative [Theobroma cacao]
3 Hb_002217_220 0.1217175177 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
4 Hb_082741_010 0.1266422974 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
5 Hb_000120_820 0.1270274872 - - dihydrodipicolinate synthase, putative [Ricinus communis]
6 Hb_000490_060 0.1297457146 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
7 Hb_010407_170 0.1297759161 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
8 Hb_007382_120 0.1302990056 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
9 Hb_002301_170 0.1315655145 - - MAC/Perforin domain-containing protein [Theobroma cacao]
10 Hb_000631_120 0.1330437117 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
11 Hb_000260_660 0.1339539966 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001104_110 0.134003022 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
13 Hb_006922_050 0.1344983326 - - PREDICTED: dipeptidyl peptidase 8 [Jatropha curcas]
14 Hb_000997_180 0.1357187565 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000905_170 0.1403566647 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
16 Hb_006538_080 0.1405886527 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
17 Hb_005433_060 0.1427694519 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
18 Hb_004631_210 0.1445401963 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
19 Hb_004934_050 0.1448722213 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
20 Hb_002631_040 0.1450960056 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001268_120 Hb_001268_120 Hb_000699_230 Hb_000699_230 Hb_001268_120--Hb_000699_230 Hb_002217_220 Hb_002217_220 Hb_001268_120--Hb_002217_220 Hb_082741_010 Hb_082741_010 Hb_001268_120--Hb_082741_010 Hb_000120_820 Hb_000120_820 Hb_001268_120--Hb_000120_820 Hb_000490_060 Hb_000490_060 Hb_001268_120--Hb_000490_060 Hb_010407_170 Hb_010407_170 Hb_001268_120--Hb_010407_170 Hb_000997_180 Hb_000997_180 Hb_000699_230--Hb_000997_180 Hb_000110_300 Hb_000110_300 Hb_000699_230--Hb_000110_300 Hb_000625_090 Hb_000625_090 Hb_000699_230--Hb_000625_090 Hb_009193_100 Hb_009193_100 Hb_000699_230--Hb_009193_100 Hb_002915_060 Hb_002915_060 Hb_000699_230--Hb_002915_060 Hb_000260_660 Hb_000260_660 Hb_002217_220--Hb_000260_660 Hb_007765_030 Hb_007765_030 Hb_002217_220--Hb_007765_030 Hb_011287_010 Hb_011287_010 Hb_002217_220--Hb_011287_010 Hb_000395_220 Hb_000395_220 Hb_002217_220--Hb_000395_220 Hb_083799_010 Hb_083799_010 Hb_002217_220--Hb_083799_010 Hb_007426_140 Hb_007426_140 Hb_002217_220--Hb_007426_140 Hb_006916_110 Hb_006916_110 Hb_082741_010--Hb_006916_110 Hb_000345_320 Hb_000345_320 Hb_082741_010--Hb_000345_320 Hb_012760_040 Hb_012760_040 Hb_082741_010--Hb_012760_040 Hb_042474_010 Hb_042474_010 Hb_082741_010--Hb_042474_010 Hb_000347_450 Hb_000347_450 Hb_082741_010--Hb_000347_450 Hb_000209_100 Hb_000209_100 Hb_082741_010--Hb_000209_100 Hb_007382_120 Hb_007382_120 Hb_000120_820--Hb_007382_120 Hb_127743_010 Hb_127743_010 Hb_000120_820--Hb_127743_010 Hb_000521_330 Hb_000521_330 Hb_000120_820--Hb_000521_330 Hb_000920_300 Hb_000920_300 Hb_000120_820--Hb_000920_300 Hb_000631_120 Hb_000631_120 Hb_000120_820--Hb_000631_120 Hb_004934_050 Hb_004934_050 Hb_000120_820--Hb_004934_050 Hb_000684_040 Hb_000684_040 Hb_000490_060--Hb_000684_040 Hb_003528_050 Hb_003528_050 Hb_000490_060--Hb_003528_050 Hb_020178_040 Hb_020178_040 Hb_000490_060--Hb_020178_040 Hb_006970_050 Hb_006970_050 Hb_000490_060--Hb_006970_050 Hb_003228_110 Hb_003228_110 Hb_000490_060--Hb_003228_110 Hb_050847_050 Hb_050847_050 Hb_000490_060--Hb_050847_050 Hb_001104_110 Hb_001104_110 Hb_010407_170--Hb_001104_110 Hb_000905_170 Hb_000905_170 Hb_010407_170--Hb_000905_170 Hb_000009_330 Hb_000009_330 Hb_010407_170--Hb_000009_330 Hb_006538_080 Hb_006538_080 Hb_010407_170--Hb_006538_080 Hb_002631_040 Hb_002631_040 Hb_010407_170--Hb_002631_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46172 14.0675 4.76612 6.38999 2.71773 3.19622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56528 8.12602 5.05097 13.9399 3.45856

CAGE analysis