Hb_001268_150

Information

Type transcription factor
Description TF Family: NAC
Location Contig1268: 142554-143793
Sequence    

Annotation

kegg
ID rcu:RCOM_1446420
description transcription factor, putative
nr
ID XP_002512886.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8GY42
description NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1
trembl
ID B9RH27
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1446420 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08104: 142706-143772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_150 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_000160_250 0.0831716841 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
3 Hb_001206_100 0.0879775129 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
4 Hb_002942_200 0.0912015547 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
5 Hb_000364_090 0.0971605863 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
6 Hb_002284_060 0.0981583778 - - sugar transporter, putative [Ricinus communis]
7 Hb_000290_030 0.1026610578 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
8 Hb_001296_060 0.1028486456 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
9 Hb_004032_190 0.1036289727 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
10 Hb_001289_010 0.1050840994 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
11 Hb_003032_030 0.1065732814 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
12 Hb_008221_200 0.1075230626 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
13 Hb_000620_040 0.1084442795 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_133974_010 0.109790315 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
15 Hb_000617_330 0.1109981788 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
16 Hb_016277_030 0.1121845074 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
17 Hb_003125_210 0.1129370848 - - Phospholipase C 4 precursor, putative [Ricinus communis]
18 Hb_147006_010 0.1132739826 - - receptor like protein 35 [Arabidopsis thaliana]
19 Hb_010222_040 0.1138440935 - - PREDICTED: kinesin-2 [Jatropha curcas]
20 Hb_001369_390 0.1139879184 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001268_150 Hb_001268_150 Hb_000160_250 Hb_000160_250 Hb_001268_150--Hb_000160_250 Hb_001206_100 Hb_001206_100 Hb_001268_150--Hb_001206_100 Hb_002942_200 Hb_002942_200 Hb_001268_150--Hb_002942_200 Hb_000364_090 Hb_000364_090 Hb_001268_150--Hb_000364_090 Hb_002284_060 Hb_002284_060 Hb_001268_150--Hb_002284_060 Hb_000290_030 Hb_000290_030 Hb_001268_150--Hb_000290_030 Hb_000160_250--Hb_000290_030 Hb_000160_250--Hb_002942_200 Hb_008221_200 Hb_008221_200 Hb_000160_250--Hb_008221_200 Hb_004696_010 Hb_004696_010 Hb_000160_250--Hb_004696_010 Hb_000718_060 Hb_000718_060 Hb_000160_250--Hb_000718_060 Hb_005183_100 Hb_005183_100 Hb_001206_100--Hb_005183_100 Hb_009421_070 Hb_009421_070 Hb_001206_100--Hb_009421_070 Hb_001206_100--Hb_002942_200 Hb_009522_020 Hb_009522_020 Hb_001206_100--Hb_009522_020 Hb_016277_030 Hb_016277_030 Hb_001206_100--Hb_016277_030 Hb_004032_190 Hb_004032_190 Hb_001206_100--Hb_004032_190 Hb_001098_040 Hb_001098_040 Hb_002942_200--Hb_001098_040 Hb_002942_200--Hb_008221_200 Hb_002942_200--Hb_009421_070 Hb_007270_020 Hb_007270_020 Hb_002942_200--Hb_007270_020 Hb_009393_090 Hb_009393_090 Hb_002942_200--Hb_009393_090 Hb_000364_090--Hb_004032_190 Hb_000417_210 Hb_000417_210 Hb_000364_090--Hb_000417_210 Hb_000676_230 Hb_000676_230 Hb_000364_090--Hb_000676_230 Hb_133974_010 Hb_133974_010 Hb_000364_090--Hb_133974_010 Hb_001289_070 Hb_001289_070 Hb_000364_090--Hb_001289_070 Hb_005711_030 Hb_005711_030 Hb_000364_090--Hb_005711_030 Hb_000103_300 Hb_000103_300 Hb_002284_060--Hb_000103_300 Hb_000152_570 Hb_000152_570 Hb_002284_060--Hb_000152_570 Hb_000193_070 Hb_000193_070 Hb_002284_060--Hb_000193_070 Hb_004466_090 Hb_004466_090 Hb_002284_060--Hb_004466_090 Hb_002391_240 Hb_002391_240 Hb_002284_060--Hb_002391_240 Hb_003894_180 Hb_003894_180 Hb_002284_060--Hb_003894_180 Hb_010557_020 Hb_010557_020 Hb_000290_030--Hb_010557_020 Hb_000977_030 Hb_000977_030 Hb_000290_030--Hb_000977_030 Hb_000856_200 Hb_000856_200 Hb_000290_030--Hb_000856_200 Hb_002724_010 Hb_002724_010 Hb_000290_030--Hb_002724_010 Hb_000473_100 Hb_000473_100 Hb_000290_030--Hb_000473_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0493039 5.78685 10.3749 24.9449 0.0850342 0.270261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100352 0 0 2.95128 18.7407

CAGE analysis