Hb_001268_230

Information

Type -
Description -
Location Contig1268: 226313-229348
Sequence    

Annotation

kegg
ID rcu:RCOM_1446790
description receptor serine-threonine protein kinase, putative (EC:2.7.11.25)
nr
ID XP_002512892.1
description receptor serine-threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID B9RH33
description Receptor serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1446790 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase cdl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08111: 227547-227649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_230 0.0 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
2 Hb_004648_040 0.0871231111 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
3 Hb_098315_110 0.1034240089 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000317_080 0.1059569045 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
5 Hb_001628_110 0.1141200984 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
6 Hb_053543_010 0.1207892229 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000300_530 0.1227362407 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
8 Hb_154381_050 0.1335904863 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001146_070 0.1337072314 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
10 Hb_005271_030 0.1345454826 - - copper-transporting atpase p-type, putative [Ricinus communis]
11 Hb_005410_010 0.1359205831 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
12 Hb_011021_030 0.1361601208 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
13 Hb_002172_030 0.1365681729 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
14 Hb_000050_120 0.1374226389 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
15 Hb_043959_010 0.1460096771 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
16 Hb_010368_070 0.1482750191 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002078_040 0.1490033304 - - protein with unknown function [Ricinus communis]
18 Hb_008147_030 0.1499670337 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
19 Hb_012654_020 0.1523477008 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001846_080 0.155793899 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001268_230 Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_001268_230--Hb_004648_040 Hb_098315_110 Hb_098315_110 Hb_001268_230--Hb_098315_110 Hb_000317_080 Hb_000317_080 Hb_001268_230--Hb_000317_080 Hb_001628_110 Hb_001628_110 Hb_001268_230--Hb_001628_110 Hb_053543_010 Hb_053543_010 Hb_001268_230--Hb_053543_010 Hb_000300_530 Hb_000300_530 Hb_001268_230--Hb_000300_530 Hb_004648_040--Hb_098315_110 Hb_011021_030 Hb_011021_030 Hb_004648_040--Hb_011021_030 Hb_004648_040--Hb_000317_080 Hb_004648_040--Hb_000300_530 Hb_000988_050 Hb_000988_050 Hb_004648_040--Hb_000988_050 Hb_098315_110--Hb_000300_530 Hb_098315_110--Hb_000317_080 Hb_130177_010 Hb_130177_010 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_000317_080--Hb_053543_010 Hb_000987_050 Hb_000987_050 Hb_000317_080--Hb_000987_050 Hb_000317_080--Hb_001628_110 Hb_002078_040 Hb_002078_040 Hb_001628_110--Hb_002078_040 Hb_002172_030 Hb_002172_030 Hb_001628_110--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_001628_110--Hb_154381_050 Hb_005410_010 Hb_005410_010 Hb_001628_110--Hb_005410_010 Hb_043637_010 Hb_043637_010 Hb_001628_110--Hb_043637_010 Hb_003507_020 Hb_003507_020 Hb_001628_110--Hb_003507_020 Hb_053543_010--Hb_000987_050 Hb_043959_010 Hb_043959_010 Hb_053543_010--Hb_043959_010 Hb_053543_010--Hb_098315_110 Hb_053543_010--Hb_130177_010 Hb_003125_050 Hb_003125_050 Hb_000300_530--Hb_003125_050 Hb_023610_010 Hb_023610_010 Hb_000300_530--Hb_023610_010 Hb_012654_020 Hb_012654_020 Hb_000300_530--Hb_012654_020 Hb_000300_530--Hb_011021_030 Hb_000300_530--Hb_154381_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.934 3.83213 1.4619 3.66118 110.274 59.9565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.765 9.8297 24.0025 3.67077 0.582275

CAGE analysis