Hb_001268_240

Information

Type -
Description -
Location Contig1268: 234671-239762
Sequence    

Annotation

kegg
ID rcu:RCOM_1446800
description hypothetical protein
nr
ID XP_012067301.1
description PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L042
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26829 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08112: 234547-235737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_240 0.0 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
2 Hb_000417_130 0.0600375223 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
3 Hb_001357_350 0.0626198919 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000640_170 0.0663860715 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
5 Hb_001318_280 0.0691931309 - - Protein FAM18B, putative [Ricinus communis]
6 Hb_009898_050 0.0700398692 - - PREDICTED: beta-taxilin [Jatropha curcas]
7 Hb_172632_100 0.0706435364 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
8 Hb_000110_310 0.0732662344 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
9 Hb_000297_160 0.0750828793 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
10 Hb_001599_040 0.0774006205 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
11 Hb_000381_120 0.0780027508 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
12 Hb_005144_090 0.0793112272 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
13 Hb_000035_470 0.0810995742 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
14 Hb_001188_070 0.0815581339 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
15 Hb_123915_040 0.0816486388 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
16 Hb_001946_400 0.0832723266 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
17 Hb_000245_220 0.0843517899 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
18 Hb_000270_680 0.0857097364 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
19 Hb_000816_250 0.0866961402 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
20 Hb_002553_060 0.0868187836 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001268_240 Hb_001268_240 Hb_000417_130 Hb_000417_130 Hb_001268_240--Hb_000417_130 Hb_001357_350 Hb_001357_350 Hb_001268_240--Hb_001357_350 Hb_000640_170 Hb_000640_170 Hb_001268_240--Hb_000640_170 Hb_001318_280 Hb_001318_280 Hb_001268_240--Hb_001318_280 Hb_009898_050 Hb_009898_050 Hb_001268_240--Hb_009898_050 Hb_172632_100 Hb_172632_100 Hb_001268_240--Hb_172632_100 Hb_123915_040 Hb_123915_040 Hb_000417_130--Hb_123915_040 Hb_001357_250 Hb_001357_250 Hb_000417_130--Hb_001357_250 Hb_000417_130--Hb_001357_350 Hb_000035_470 Hb_000035_470 Hb_000417_130--Hb_000035_470 Hb_063716_100 Hb_063716_100 Hb_000417_130--Hb_063716_100 Hb_001142_030 Hb_001142_030 Hb_001357_350--Hb_001142_030 Hb_003964_070 Hb_003964_070 Hb_001357_350--Hb_003964_070 Hb_000883_020 Hb_000883_020 Hb_001357_350--Hb_000883_020 Hb_000215_110 Hb_000215_110 Hb_001357_350--Hb_000215_110 Hb_168978_030 Hb_168978_030 Hb_000640_170--Hb_168978_030 Hb_000640_170--Hb_000035_470 Hb_001599_040 Hb_001599_040 Hb_000640_170--Hb_001599_040 Hb_000640_170--Hb_009898_050 Hb_000156_010 Hb_000156_010 Hb_000640_170--Hb_000156_010 Hb_026198_070 Hb_026198_070 Hb_000640_170--Hb_026198_070 Hb_001318_280--Hb_172632_100 Hb_003994_230 Hb_003994_230 Hb_001318_280--Hb_003994_230 Hb_008616_050 Hb_008616_050 Hb_001318_280--Hb_008616_050 Hb_000081_160 Hb_000081_160 Hb_001318_280--Hb_000081_160 Hb_002553_060 Hb_002553_060 Hb_001318_280--Hb_002553_060 Hb_002641_060 Hb_002641_060 Hb_001318_280--Hb_002641_060 Hb_006153_070 Hb_006153_070 Hb_009898_050--Hb_006153_070 Hb_000110_310 Hb_000110_310 Hb_009898_050--Hb_000110_310 Hb_009898_050--Hb_008616_050 Hb_000915_260 Hb_000915_260 Hb_009898_050--Hb_000915_260 Hb_000579_120 Hb_000579_120 Hb_009898_050--Hb_000579_120 Hb_011628_060 Hb_011628_060 Hb_172632_100--Hb_011628_060 Hb_172632_100--Hb_000081_160 Hb_172632_100--Hb_008616_050 Hb_172632_100--Hb_001599_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33958 0.773551 2.37663 2.07218 2.09 2.06835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9705 2.59692 1.57678 2.34575 1.79775

CAGE analysis