Hb_001268_290

Information

Type -
Description -
Location Contig1268: 291529-291900
Sequence    

Annotation

kegg
ID vvi:100254900
description glutaredoxin-C1
nr
ID XP_012067297.1
description PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
swissprot
ID Q8LF89
description Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=1 SV=2
trembl
ID A0A067L3M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26821 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_290 0.0 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
2 Hb_006386_010 0.047446408 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
3 Hb_001410_080 0.0758180715 - - ring finger protein, putative [Ricinus communis]
4 Hb_001019_030 0.0923136851 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
5 Hb_184074_010 0.0930244076 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
6 Hb_182869_010 0.0979767806 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_001195_710 0.1037595787 - - glycosyltransferase family GT8 protein [Populus deltoides]
8 Hb_000368_050 0.1073353407 - - beta-galactosidase, putative [Ricinus communis]
9 Hb_002171_050 0.1079615315 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
10 Hb_001534_140 0.1083102202 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
11 Hb_000334_030 0.1089464462 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000910_030 0.1090164906 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000620_050 0.1110347636 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
14 Hb_005332_160 0.1159893075 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
15 Hb_047612_010 0.1202663764 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
16 Hb_004625_020 0.1219522668 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
17 Hb_001976_100 0.1226615404 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
18 Hb_004930_020 0.124573535 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
19 Hb_142056_010 0.1250854063 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
20 Hb_003371_280 0.1251954443 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001268_290 Hb_001268_290 Hb_006386_010 Hb_006386_010 Hb_001268_290--Hb_006386_010 Hb_001410_080 Hb_001410_080 Hb_001268_290--Hb_001410_080 Hb_001019_030 Hb_001019_030 Hb_001268_290--Hb_001019_030 Hb_184074_010 Hb_184074_010 Hb_001268_290--Hb_184074_010 Hb_182869_010 Hb_182869_010 Hb_001268_290--Hb_182869_010 Hb_001195_710 Hb_001195_710 Hb_001268_290--Hb_001195_710 Hb_006386_010--Hb_001019_030 Hb_006386_010--Hb_001410_080 Hb_000910_030 Hb_000910_030 Hb_006386_010--Hb_000910_030 Hb_000344_030 Hb_000344_030 Hb_006386_010--Hb_000344_030 Hb_006386_010--Hb_001195_710 Hb_001410_080--Hb_000910_030 Hb_005332_160 Hb_005332_160 Hb_001410_080--Hb_005332_160 Hb_141194_020 Hb_141194_020 Hb_001410_080--Hb_141194_020 Hb_169077_030 Hb_169077_030 Hb_001410_080--Hb_169077_030 Hb_001019_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_001019_030--Hb_000334_030 Hb_004930_020 Hb_004930_020 Hb_001019_030--Hb_004930_020 Hb_005116_040 Hb_005116_040 Hb_001019_030--Hb_005116_040 Hb_184074_010--Hb_000334_030 Hb_000620_050 Hb_000620_050 Hb_184074_010--Hb_000620_050 Hb_000959_110 Hb_000959_110 Hb_184074_010--Hb_000959_110 Hb_184074_010--Hb_004930_020 Hb_003371_280 Hb_003371_280 Hb_184074_010--Hb_003371_280 Hb_006755_030 Hb_006755_030 Hb_184074_010--Hb_006755_030 Hb_000368_050 Hb_000368_050 Hb_182869_010--Hb_000368_050 Hb_001511_220 Hb_001511_220 Hb_182869_010--Hb_001511_220 Hb_002925_060 Hb_002925_060 Hb_182869_010--Hb_002925_060 Hb_182869_010--Hb_000620_050 Hb_005711_030 Hb_005711_030 Hb_182869_010--Hb_005711_030 Hb_003058_240 Hb_003058_240 Hb_182869_010--Hb_003058_240 Hb_001096_010 Hb_001096_010 Hb_001195_710--Hb_001096_010 Hb_001195_710--Hb_000368_050 Hb_001195_710--Hb_001511_220 Hb_002171_050 Hb_002171_050 Hb_001195_710--Hb_002171_050 Hb_001195_710--Hb_182869_010 Hb_000449_070 Hb_000449_070 Hb_001195_710--Hb_000449_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.171513 0.242759 2.78161 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.31486 1.23754

CAGE analysis