Hb_001268_320

Information

Type -
Description -
Location Contig1268: 303715-306402
Sequence    

Annotation

kegg
ID bvg:104887816
description uncharacterized LOC104887816
nr
ID XP_010670869.1
description PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID B2BXY8
description Non-LTR retrotransposon transposase OS=Arabidopsis cebennensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08123: 304269-304491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_320 0.0 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
2 Hb_010377_020 0.1382458421 - - -
3 Hb_000110_390 0.2198209736 - - PREDICTED: uncharacterized protein LOC103338992 [Prunus mume]
4 Hb_002092_030 0.2208403457 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
5 Hb_001242_010 0.2433743897 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
6 Hb_001894_180 0.2483226178 - - galactinol synthase [Manihot esculenta]
7 Hb_001804_030 0.2531093766 - - kinase, putative [Ricinus communis]
8 Hb_002631_190 0.2752975913 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
9 Hb_168319_020 0.2863639226 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000398_050 0.2880068945 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
11 Hb_001329_030 0.2887981833 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006153_180 0.2991518059 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
13 Hb_006538_160 0.3046619846 - - conserved hypothetical protein [Ricinus communis]
14 Hb_020712_050 0.3077115881 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
15 Hb_023344_070 0.3096770013 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_000028_500 0.3097440835 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
17 Hb_003050_030 0.3107326603 - - Calcyclin-binding protein, putative [Ricinus communis]
18 Hb_007975_050 0.3127790336 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
19 Hb_000450_170 0.315718722 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002284_180 0.3170649236 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_320 Hb_001268_320 Hb_010377_020 Hb_010377_020 Hb_001268_320--Hb_010377_020 Hb_000110_390 Hb_000110_390 Hb_001268_320--Hb_000110_390 Hb_002092_030 Hb_002092_030 Hb_001268_320--Hb_002092_030 Hb_001242_010 Hb_001242_010 Hb_001268_320--Hb_001242_010 Hb_001894_180 Hb_001894_180 Hb_001268_320--Hb_001894_180 Hb_001804_030 Hb_001804_030 Hb_001268_320--Hb_001804_030 Hb_010377_020--Hb_002092_030 Hb_010377_020--Hb_000110_390 Hb_010377_020--Hb_001242_010 Hb_010377_020--Hb_001894_180 Hb_001329_030 Hb_001329_030 Hb_010377_020--Hb_001329_030 Hb_168319_020 Hb_168319_020 Hb_000110_390--Hb_168319_020 Hb_000110_390--Hb_001242_010 Hb_000110_390--Hb_002092_030 Hb_000110_390--Hb_001894_180 Hb_004631_030 Hb_004631_030 Hb_002092_030--Hb_004631_030 Hb_002374_060 Hb_002374_060 Hb_002092_030--Hb_002374_060 Hb_000956_060 Hb_000956_060 Hb_002092_030--Hb_000956_060 Hb_010162_010 Hb_010162_010 Hb_002092_030--Hb_010162_010 Hb_000297_220 Hb_000297_220 Hb_002092_030--Hb_000297_220 Hb_092995_020 Hb_092995_020 Hb_001242_010--Hb_092995_020 Hb_003050_030 Hb_003050_030 Hb_001242_010--Hb_003050_030 Hb_020712_050 Hb_020712_050 Hb_001242_010--Hb_020712_050 Hb_001894_180--Hb_168319_020 Hb_000398_050 Hb_000398_050 Hb_001894_180--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_001894_180--Hb_000028_500 Hb_126711_010 Hb_126711_010 Hb_001894_180--Hb_126711_010 Hb_001894_180--Hb_001329_030 Hb_006538_160 Hb_006538_160 Hb_001804_030--Hb_006538_160 Hb_034299_070 Hb_034299_070 Hb_001804_030--Hb_034299_070 Hb_001946_370 Hb_001946_370 Hb_001804_030--Hb_001946_370 Hb_000210_190 Hb_000210_190 Hb_001804_030--Hb_000210_190 Hb_001804_030--Hb_126711_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0219108 0.0439488 0.0328139 0.350082 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.145353 0.11107 0

CAGE analysis