Hb_001268_340

Information

Type -
Description -
Location Contig1268: 308923-317240
Sequence    

Annotation

kegg
ID rcu:RCOM_1447060
description Actin, putative
nr
ID XP_002512899.1
description Actin, putative [Ricinus communis]
swissprot
ID Q9LSD6
description Actin-related protein 2 OS=Arabidopsis thaliana GN=ARP2 PE=1 SV=1
trembl
ID B9RH40
description Actin, putative OS=Ricinus communis GN=RCOM_1447060 PE=3 SV=1
Gene Ontology
ID GO:0005885
description actin-related protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08124: 308869-310236 , PASA_asmbl_08125: 309326-315624 , PASA_asmbl_08126: 310276-316996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_340 0.0 - - Actin, putative [Ricinus communis]
2 Hb_000656_300 0.0957587516 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
3 Hb_003540_050 0.1048012288 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
4 Hb_001195_640 0.1208113681 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
5 Hb_004032_160 0.1214494259 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
6 Hb_000072_300 0.1227553901 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
7 Hb_004117_190 0.1247383813 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
8 Hb_000258_040 0.1286905714 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
9 Hb_000115_080 0.1302479278 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
10 Hb_002686_080 0.1308447238 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
11 Hb_004079_130 0.1319564951 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
12 Hb_124373_010 0.1333750377 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
13 Hb_000186_300 0.1344617066 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
14 Hb_003050_260 0.1348864789 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
15 Hb_007919_110 0.135858288 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
16 Hb_001053_190 0.1359184217 - - ADP,ATP carrier protein, putative [Ricinus communis]
17 Hb_005535_080 0.136299841 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
18 Hb_002311_380 0.1388182718 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
19 Hb_004055_050 0.1412808712 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
20 Hb_005064_010 0.1422595277 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]

Gene co-expression network

sample Hb_001268_340 Hb_001268_340 Hb_000656_300 Hb_000656_300 Hb_001268_340--Hb_000656_300 Hb_003540_050 Hb_003540_050 Hb_001268_340--Hb_003540_050 Hb_001195_640 Hb_001195_640 Hb_001268_340--Hb_001195_640 Hb_004032_160 Hb_004032_160 Hb_001268_340--Hb_004032_160 Hb_000072_300 Hb_000072_300 Hb_001268_340--Hb_000072_300 Hb_004117_190 Hb_004117_190 Hb_001268_340--Hb_004117_190 Hb_000656_300--Hb_003540_050 Hb_002740_090 Hb_002740_090 Hb_000656_300--Hb_002740_090 Hb_004079_130 Hb_004079_130 Hb_000656_300--Hb_004079_130 Hb_001825_040 Hb_001825_040 Hb_000656_300--Hb_001825_040 Hb_002311_380 Hb_002311_380 Hb_000656_300--Hb_002311_380 Hb_003540_050--Hb_000072_300 Hb_002686_080 Hb_002686_080 Hb_003540_050--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_003540_050--Hb_005064_010 Hb_001053_190 Hb_001053_190 Hb_003540_050--Hb_001053_190 Hb_001279_190 Hb_001279_190 Hb_003540_050--Hb_001279_190 Hb_002740_080 Hb_002740_080 Hb_003540_050--Hb_002740_080 Hb_160256_010 Hb_160256_010 Hb_001195_640--Hb_160256_010 Hb_001195_640--Hb_001053_190 Hb_001195_640--Hb_003540_050 Hb_006816_100 Hb_006816_100 Hb_001195_640--Hb_006816_100 Hb_010812_070 Hb_010812_070 Hb_001195_640--Hb_010812_070 Hb_005784_070 Hb_005784_070 Hb_004032_160--Hb_005784_070 Hb_001519_040 Hb_001519_040 Hb_004032_160--Hb_001519_040 Hb_004032_160--Hb_001195_640 Hb_000030_160 Hb_000030_160 Hb_004032_160--Hb_000030_160 Hb_004032_160--Hb_001053_190 Hb_000072_300--Hb_002740_080 Hb_000359_290 Hb_000359_290 Hb_000072_300--Hb_000359_290 Hb_000072_300--Hb_002686_080 Hb_000072_300--Hb_005064_010 Hb_000152_600 Hb_000152_600 Hb_000072_300--Hb_000152_600 Hb_000580_100 Hb_000580_100 Hb_004117_190--Hb_000580_100 Hb_007741_130 Hb_007741_130 Hb_004117_190--Hb_007741_130 Hb_005054_220 Hb_005054_220 Hb_004117_190--Hb_005054_220 Hb_101146_010 Hb_101146_010 Hb_004117_190--Hb_101146_010 Hb_004117_190--Hb_003540_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7149 8.65856 22.7529 27.5271 4.06649 5.65282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.60419 6.36281 3.50092 8.52333 8.00421

CAGE analysis