Hb_001268_360

Information

Type -
Description -
Location Contig1268: 339421-339765
Sequence    

Annotation

kegg
ID egr:104447679
description uncharacterized LOC104447679
nr
ID XP_010059692.1
description PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059D025
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00966 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_360 0.0 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
2 Hb_010896_010 0.0070919443 - - -
3 Hb_002127_010 0.009159449 - - Aluminum activated malate transporter family protein, putative [Theobroma cacao]
4 Hb_168436_010 0.0177098674 - - PREDICTED: probable receptor-like protein kinase At1g67000-like [Citrus sinensis]
5 Hb_067197_020 0.0182290934 - - -
6 Hb_021409_060 0.0224334386 - - PREDICTED: aluminum-activated malate transporter 10-like [Jatropha curcas]
7 Hb_081445_010 0.0383660596 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
8 Hb_101733_020 0.0389720603 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
9 Hb_004899_160 0.0433582714 - - -
10 Hb_000672_070 0.0481847094 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
11 Hb_156055_020 0.0510894044 - - conserved hypothetical protein [Ricinus communis]
12 Hb_048826_010 0.0592514746 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
13 Hb_119789_010 0.059959223 - - PREDICTED: uncharacterized protein LOC105134438 [Populus euphratica]
14 Hb_002582_090 0.061909361 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
15 Hb_132148_010 0.0715733192 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
16 Hb_000896_140 0.0815018161 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
17 Hb_007040_030 0.0821102551 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
18 Hb_000926_170 0.088622577 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003766_030 0.0969913372 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
20 Hb_001373_120 0.1013635253 - - Uncharacterized protein TCM_031358 [Theobroma cacao]

Gene co-expression network

sample Hb_001268_360 Hb_001268_360 Hb_010896_010 Hb_010896_010 Hb_001268_360--Hb_010896_010 Hb_002127_010 Hb_002127_010 Hb_001268_360--Hb_002127_010 Hb_168436_010 Hb_168436_010 Hb_001268_360--Hb_168436_010 Hb_067197_020 Hb_067197_020 Hb_001268_360--Hb_067197_020 Hb_021409_060 Hb_021409_060 Hb_001268_360--Hb_021409_060 Hb_081445_010 Hb_081445_010 Hb_001268_360--Hb_081445_010 Hb_010896_010--Hb_067197_020 Hb_010896_010--Hb_002127_010 Hb_010896_010--Hb_168436_010 Hb_010896_010--Hb_021409_060 Hb_010896_010--Hb_081445_010 Hb_002127_010--Hb_168436_010 Hb_002127_010--Hb_021409_060 Hb_002127_010--Hb_067197_020 Hb_004899_160 Hb_004899_160 Hb_002127_010--Hb_004899_160 Hb_168436_010--Hb_021409_060 Hb_168436_010--Hb_004899_160 Hb_156055_020 Hb_156055_020 Hb_168436_010--Hb_156055_020 Hb_067197_020--Hb_081445_010 Hb_101733_020 Hb_101733_020 Hb_067197_020--Hb_101733_020 Hb_000672_070 Hb_000672_070 Hb_067197_020--Hb_000672_070 Hb_021409_060--Hb_004899_160 Hb_021409_060--Hb_156055_020 Hb_081445_010--Hb_101733_020 Hb_081445_010--Hb_000672_070 Hb_048826_010 Hb_048826_010 Hb_081445_010--Hb_048826_010 Hb_002582_090 Hb_002582_090 Hb_081445_010--Hb_002582_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.47319 0.0988602 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis