Hb_001268_370

Information

Type -
Description -
Location Contig1268: 341769-344417
Sequence    

Annotation

kegg
ID rcu:RCOM_1447070
description monovalent cation:proton antiporter, putative
nr
ID XP_002512900.1
description monovalent cation:proton antiporter, putative [Ricinus communis]
swissprot
ID Q9SIT5
description Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1
trembl
ID B9RH41
description Monovalent cation:proton antiporter, putative OS=Ricinus communis GN=RCOM_1447070 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation h(+) antiporter 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08134: 343179-343378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_370 0.0 - - monovalent cation:proton antiporter, putative [Ricinus communis]
2 Hb_080761_010 0.2519282374 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_001247_110 0.2729835531 - - Polygalacturonase precursor, putative [Ricinus communis]
4 Hb_003274_030 0.2843856238 - - putative wall-associated kinase family protein [Populus trichocarpa]
5 Hb_002766_050 0.298824193 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
6 Hb_002301_350 0.2992615593 - - 30S ribosomal protein S5, putative [Ricinus communis]
7 Hb_006824_040 0.2998271056 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Populus euphratica]
8 Hb_009150_030 0.3047889904 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]
9 Hb_007218_060 0.3157846654 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
10 Hb_001054_070 0.3166760658 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
11 Hb_000809_090 0.3192239673 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
12 Hb_001862_090 0.3261719306 - - hypothetical protein VITISV_026680 [Vitis vinifera]
13 Hb_010315_080 0.3264623497 - - -
14 Hb_099084_010 0.3291996223 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_000402_090 0.3296985872 - - Lipase [Glycine soja]
16 Hb_002205_240 0.330274068 - - hypothetical protein PRUPE_ppa005987mg [Prunus persica]
17 Hb_002482_030 0.3309708982 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
18 Hb_005018_020 0.3317785168 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Jatropha curcas]
19 Hb_003001_070 0.3320195072 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
20 Hb_008173_150 0.3334596874 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_370 Hb_001268_370 Hb_080761_010 Hb_080761_010 Hb_001268_370--Hb_080761_010 Hb_001247_110 Hb_001247_110 Hb_001268_370--Hb_001247_110 Hb_003274_030 Hb_003274_030 Hb_001268_370--Hb_003274_030 Hb_002766_050 Hb_002766_050 Hb_001268_370--Hb_002766_050 Hb_002301_350 Hb_002301_350 Hb_001268_370--Hb_002301_350 Hb_006824_040 Hb_006824_040 Hb_001268_370--Hb_006824_040 Hb_006569_050 Hb_006569_050 Hb_080761_010--Hb_006569_050 Hb_000958_100 Hb_000958_100 Hb_080761_010--Hb_000958_100 Hb_015778_060 Hb_015778_060 Hb_080761_010--Hb_015778_060 Hb_007576_150 Hb_007576_150 Hb_080761_010--Hb_007576_150 Hb_000856_320 Hb_000856_320 Hb_080761_010--Hb_000856_320 Hb_009150_030 Hb_009150_030 Hb_080761_010--Hb_009150_030 Hb_002799_130 Hb_002799_130 Hb_001247_110--Hb_002799_130 Hb_001546_160 Hb_001546_160 Hb_001247_110--Hb_001546_160 Hb_005000_080 Hb_005000_080 Hb_001247_110--Hb_005000_080 Hb_007576_070 Hb_007576_070 Hb_001247_110--Hb_007576_070 Hb_000270_600 Hb_000270_600 Hb_001247_110--Hb_000270_600 Hb_001054_070 Hb_001054_070 Hb_001247_110--Hb_001054_070 Hb_003417_030 Hb_003417_030 Hb_003274_030--Hb_003417_030 Hb_002482_030 Hb_002482_030 Hb_003274_030--Hb_002482_030 Hb_003725_010 Hb_003725_010 Hb_003274_030--Hb_003725_010 Hb_003216_060 Hb_003216_060 Hb_003274_030--Hb_003216_060 Hb_004208_140 Hb_004208_140 Hb_003274_030--Hb_004208_140 Hb_012799_150 Hb_012799_150 Hb_003274_030--Hb_012799_150 Hb_002766_050--Hb_004208_140 Hb_010891_020 Hb_010891_020 Hb_002766_050--Hb_010891_020 Hb_001616_110 Hb_001616_110 Hb_002766_050--Hb_001616_110 Hb_002766_050--Hb_001054_070 Hb_027654_080 Hb_027654_080 Hb_002766_050--Hb_027654_080 Hb_000123_240 Hb_000123_240 Hb_002766_050--Hb_000123_240 Hb_002301_350--Hb_006824_040 Hb_000016_200 Hb_000016_200 Hb_002301_350--Hb_000016_200 Hb_000483_100 Hb_000483_100 Hb_002301_350--Hb_000483_100 Hb_002290_030 Hb_002290_030 Hb_002301_350--Hb_002290_030 Hb_001486_250 Hb_001486_250 Hb_002301_350--Hb_001486_250 Hb_004375_050 Hb_004375_050 Hb_002301_350--Hb_004375_050 Hb_004218_020 Hb_004218_020 Hb_006824_040--Hb_004218_020 Hb_006824_040--Hb_001486_250 Hb_002205_240 Hb_002205_240 Hb_006824_040--Hb_002205_240 Hb_011609_090 Hb_011609_090 Hb_006824_040--Hb_011609_090 Hb_004218_010 Hb_004218_010 Hb_006824_040--Hb_004218_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0446562 0.0374505 0 0.00767804 0.0071722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0146537 0.0279066 0.00582114 0.031113

CAGE analysis