Hb_001268_380

Information

Type -
Description -
Location Contig1268: 343166-346767
Sequence    

Annotation

kegg
ID rcu:RCOM_1447080
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067281.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
swissprot
ID Q9FMU2
description Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana GN=At5g14080 PE=2 SV=2
trembl
ID A0A067L030
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26814 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein at5g14080

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08135: 343619-344013 , PASA_asmbl_08136: 344080-344253 , PASA_asmbl_08137: 344413-344843 , PASA_asmbl_08138: 344858-345533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_380 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
2 Hb_004228_020 0.0696928208 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
3 Hb_009767_080 0.0719548806 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
4 Hb_000890_050 0.0784073349 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
5 Hb_002780_010 0.080468305 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
6 Hb_005486_030 0.0825231975 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
7 Hb_002007_160 0.0828537118 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
8 Hb_000189_110 0.0841757034 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
9 Hb_000321_150 0.0858477504 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
10 Hb_000866_120 0.0895453126 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
11 Hb_029142_050 0.0906764604 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_005539_090 0.0923183431 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
13 Hb_000574_400 0.0938772203 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
14 Hb_001967_030 0.095340178 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
15 Hb_000977_120 0.0953406549 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
16 Hb_000130_490 0.0961516417 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
17 Hb_000264_320 0.0961670729 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
18 Hb_000599_190 0.0965521003 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
19 Hb_002316_150 0.0968814342 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
20 Hb_000318_390 0.0985784394 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_380 Hb_001268_380 Hb_004228_020 Hb_004228_020 Hb_001268_380--Hb_004228_020 Hb_009767_080 Hb_009767_080 Hb_001268_380--Hb_009767_080 Hb_000890_050 Hb_000890_050 Hb_001268_380--Hb_000890_050 Hb_002780_010 Hb_002780_010 Hb_001268_380--Hb_002780_010 Hb_005486_030 Hb_005486_030 Hb_001268_380--Hb_005486_030 Hb_002007_160 Hb_002007_160 Hb_001268_380--Hb_002007_160 Hb_000321_150 Hb_000321_150 Hb_004228_020--Hb_000321_150 Hb_001967_030 Hb_001967_030 Hb_004228_020--Hb_001967_030 Hb_000977_120 Hb_000977_120 Hb_004228_020--Hb_000977_120 Hb_005539_090 Hb_005539_090 Hb_004228_020--Hb_005539_090 Hb_006117_080 Hb_006117_080 Hb_004228_020--Hb_006117_080 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_004143_130 Hb_004143_130 Hb_000890_050--Hb_004143_130 Hb_000270_670 Hb_000270_670 Hb_000890_050--Hb_000270_670 Hb_015807_070 Hb_015807_070 Hb_000890_050--Hb_015807_070 Hb_000318_390 Hb_000318_390 Hb_000890_050--Hb_000318_390 Hb_000890_050--Hb_001967_030 Hb_002780_010--Hb_002007_160 Hb_002780_010--Hb_009898_010 Hb_002780_010--Hb_009767_080 Hb_002780_010--Hb_000321_150 Hb_000260_070 Hb_000260_070 Hb_002780_010--Hb_000260_070 Hb_000130_490 Hb_000130_490 Hb_005486_030--Hb_000130_490 Hb_000672_040 Hb_000672_040 Hb_005486_030--Hb_000672_040 Hb_002316_160 Hb_002316_160 Hb_005486_030--Hb_002316_160 Hb_005486_030--Hb_009767_080 Hb_005486_030--Hb_009898_010 Hb_008053_040 Hb_008053_040 Hb_005486_030--Hb_008053_040 Hb_000866_120 Hb_000866_120 Hb_002007_160--Hb_000866_120 Hb_000599_190 Hb_000599_190 Hb_002007_160--Hb_000599_190 Hb_029142_050 Hb_029142_050 Hb_002007_160--Hb_029142_050 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002798_070 Hb_002798_070 Hb_002007_160--Hb_002798_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24119 6.43405 1.62311 1.58079 2.68156 3.83493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.444 2.23212 4.47179 2.87552 4.38118

CAGE analysis