Hb_001268_390

Information

Type -
Description -
Location Contig1268: 347490-350973
Sequence    

Annotation

kegg
ID rcu:RCOM_1447090
description amino acid binding protein, putative
nr
ID XP_011000958.1
description PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
swissprot
ID Q9SGA0
description ACT domain-containing protein ACR6 OS=Arabidopsis thaliana GN=ACR6 PE=2 SV=1
trembl
ID B9P4Y4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s33460g PE=4 SV=1
Gene Ontology
ID GO:0016597
description amino acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_390 0.0 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
2 Hb_116086_010 0.1014772071 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
3 Hb_001123_290 0.1134396001 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
4 Hb_003752_100 0.1156419335 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
5 Hb_001864_060 0.12439101 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
6 Hb_000025_330 0.1275366021 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
7 Hb_005551_060 0.1328546926 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
8 Hb_003097_100 0.1366967211 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
9 Hb_000140_070 0.138385881 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
10 Hb_002005_110 0.1423232494 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
11 Hb_027506_020 0.1435790675 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
12 Hb_001247_120 0.1476762248 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
13 Hb_001828_130 0.1486353819 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
14 Hb_001205_030 0.1489346046 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
15 Hb_001856_230 0.149273998 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
16 Hb_000634_070 0.1497179001 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
17 Hb_004109_030 0.1502348944 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003055_060 0.1506294629 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
19 Hb_146464_010 0.1526313144 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_000925_160 0.1526682622 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001268_390 Hb_001268_390 Hb_116086_010 Hb_116086_010 Hb_001268_390--Hb_116086_010 Hb_001123_290 Hb_001123_290 Hb_001268_390--Hb_001123_290 Hb_003752_100 Hb_003752_100 Hb_001268_390--Hb_003752_100 Hb_001864_060 Hb_001864_060 Hb_001268_390--Hb_001864_060 Hb_000025_330 Hb_000025_330 Hb_001268_390--Hb_000025_330 Hb_005551_060 Hb_005551_060 Hb_001268_390--Hb_005551_060 Hb_116086_010--Hb_001123_290 Hb_000832_030 Hb_000832_030 Hb_116086_010--Hb_000832_030 Hb_116086_010--Hb_001864_060 Hb_002005_110 Hb_002005_110 Hb_116086_010--Hb_002005_110 Hb_003411_110 Hb_003411_110 Hb_116086_010--Hb_003411_110 Hb_155396_010 Hb_155396_010 Hb_116086_010--Hb_155396_010 Hb_000175_220 Hb_000175_220 Hb_001123_290--Hb_000175_220 Hb_000322_150 Hb_000322_150 Hb_001123_290--Hb_000322_150 Hb_001123_290--Hb_000832_030 Hb_001123_290--Hb_001864_060 Hb_001123_290--Hb_002005_110 Hb_003082_010 Hb_003082_010 Hb_003752_100--Hb_003082_010 Hb_004109_030 Hb_004109_030 Hb_003752_100--Hb_004109_030 Hb_003752_100--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_003752_100--Hb_003175_030 Hb_001828_130 Hb_001828_130 Hb_003752_100--Hb_001828_130 Hb_012055_060 Hb_012055_060 Hb_003752_100--Hb_012055_060 Hb_001864_060--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_001864_060--Hb_008511_090 Hb_001864_060--Hb_001828_130 Hb_001864_060--Hb_000025_330 Hb_000140_070 Hb_000140_070 Hb_000025_330--Hb_000140_070 Hb_001247_120 Hb_001247_120 Hb_000025_330--Hb_001247_120 Hb_001054_030 Hb_001054_030 Hb_000025_330--Hb_001054_030 Hb_000525_010 Hb_000525_010 Hb_000025_330--Hb_000525_010 Hb_000025_330--Hb_001123_290 Hb_005551_060--Hb_001247_120 Hb_027506_020 Hb_027506_020 Hb_005551_060--Hb_027506_020 Hb_001220_030 Hb_001220_030 Hb_005551_060--Hb_001220_030 Hb_005551_060--Hb_000140_070 Hb_002745_010 Hb_002745_010 Hb_005551_060--Hb_002745_010 Hb_146464_010 Hb_146464_010 Hb_005551_060--Hb_146464_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.30369 33.1355 5.21939 6.59636 5.58421 14.8953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9411 7.56004 13.8785 6.28399 3.48753

CAGE analysis