Hb_001268_420

Information

Type -
Description -
Location Contig1268: 373624-376951
Sequence    

Annotation

kegg
ID tcc:TCM_029947
description Pre T-cell antigen receptor alpha
nr
ID XP_012067275.1
description PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061GEQ2
description Pre T-cell antigen receptor alpha OS=Theobroma cacao GN=TCM_029947 PE=4 SV=1
Gene Ontology
ID GO:0005747
description pre t-cell antigen receptor alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08144: 373634-376814 , PASA_asmbl_08145: 375146-375569
cDNA
(Sanger)
(ID:Location)		 005_L13.ab1: 373634-376813 , 011_J10.ab1: 373703-376709 , 012_G04.ab1: 373754-376786 , 020_C10.ab1: 373703-376709 , 030_E24.ab1: 373788-376814 , 031_I16.ab1: 373783-376813

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_420 0.0 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
2 Hb_001604_060 0.0663628107 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
3 Hb_001427_200 0.0678034846 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
4 Hb_032264_070 0.0759068918 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
5 Hb_004195_270 0.0782569484 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
6 Hb_001105_030 0.0817157128 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
7 Hb_028872_080 0.0842054813 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
8 Hb_017225_020 0.0848067864 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
9 Hb_002799_110 0.0876513213 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
10 Hb_012725_050 0.0895933177 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
11 Hb_012675_050 0.0907104704 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010361_010 0.0916043985 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
13 Hb_002871_190 0.0919386064 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
14 Hb_000329_200 0.0921552908 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
15 Hb_011716_130 0.094313561 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
16 Hb_118419_010 0.0944447533 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_011909_100 0.0951770171 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000614_220 0.0956229534 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
19 Hb_005847_060 0.0963240693 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
20 Hb_002490_020 0.0974071581 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001268_420 Hb_001268_420 Hb_001604_060 Hb_001604_060 Hb_001268_420--Hb_001604_060 Hb_001427_200 Hb_001427_200 Hb_001268_420--Hb_001427_200 Hb_032264_070 Hb_032264_070 Hb_001268_420--Hb_032264_070 Hb_004195_270 Hb_004195_270 Hb_001268_420--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_001268_420--Hb_001105_030 Hb_028872_080 Hb_028872_080 Hb_001268_420--Hb_028872_080 Hb_000329_200 Hb_000329_200 Hb_001604_060--Hb_000329_200 Hb_017225_020 Hb_017225_020 Hb_001604_060--Hb_017225_020 Hb_001604_060--Hb_004195_270 Hb_118419_010 Hb_118419_010 Hb_001604_060--Hb_118419_010 Hb_001604_060--Hb_028872_080 Hb_003683_120 Hb_003683_120 Hb_001427_200--Hb_003683_120 Hb_001427_200--Hb_032264_070 Hb_001427_200--Hb_004195_270 Hb_001427_200--Hb_001105_030 Hb_012675_050 Hb_012675_050 Hb_001427_200--Hb_012675_050 Hb_000329_320 Hb_000329_320 Hb_032264_070--Hb_000329_320 Hb_000656_240 Hb_000656_240 Hb_032264_070--Hb_000656_240 Hb_000985_030 Hb_000985_030 Hb_032264_070--Hb_000985_030 Hb_000614_160 Hb_000614_160 Hb_032264_070--Hb_000614_160 Hb_000046_050 Hb_000046_050 Hb_032264_070--Hb_000046_050 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_000205_090 Hb_000205_090 Hb_004195_270--Hb_000205_090 Hb_004195_270--Hb_118419_010 Hb_000787_050 Hb_000787_050 Hb_004195_270--Hb_000787_050 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_000059_370 Hb_000059_370 Hb_001105_030--Hb_000059_370 Hb_001821_010 Hb_001821_010 Hb_001105_030--Hb_001821_010 Hb_012725_050 Hb_012725_050 Hb_001105_030--Hb_012725_050 Hb_001157_020 Hb_001157_020 Hb_001105_030--Hb_001157_020 Hb_000580_090 Hb_000580_090 Hb_001105_030--Hb_000580_090 Hb_000815_320 Hb_000815_320 Hb_001105_030--Hb_000815_320 Hb_026889_030 Hb_026889_030 Hb_028872_080--Hb_026889_030 Hb_006831_120 Hb_006831_120 Hb_028872_080--Hb_006831_120 Hb_028872_080--Hb_017225_020 Hb_010361_010 Hb_010361_010 Hb_028872_080--Hb_010361_010 Hb_028872_080--Hb_118419_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
171.072 43.4534 173.092 89.3247 139.132 137.869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
254.89 287 237.386 98.6692 180.929

CAGE analysis