Hb_001269_050

Information

Type -
Description -
Location Contig1269: 79528-81261
Sequence    

Annotation

kegg
ID rcu:RCOM_0471210
description F-box/LRR-repeat protein, putative
nr
ID XP_012073066.1
description PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
swissprot
ID Q9C5D2
description F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1
trembl
ID B9SMV8
description F-box/LRR-repeat protein, putative OS=Ricinus communis GN=RCOM_0471210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_050 0.0 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
2 Hb_000492_080 0.0929024534 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
3 Hb_014720_030 0.1012411726 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
4 Hb_001998_220 0.1054272532 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
5 Hb_013405_180 0.1066658614 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
6 Hb_011616_040 0.1090201129 - - glucan water dikinase 3, partial [Manihot esculenta]
7 Hb_001054_120 0.1123895473 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
8 Hb_001226_110 0.1126388907 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
9 Hb_005000_090 0.1168459465 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
10 Hb_000340_360 0.1169256516 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
11 Hb_001484_090 0.1169759616 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
12 Hb_000008_280 0.1178734852 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
13 Hb_013399_090 0.118336149 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
14 Hb_001702_050 0.1199920222 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
15 Hb_000367_020 0.1203931952 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
16 Hb_000445_130 0.1206532885 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
17 Hb_001414_010 0.1223098391 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
18 Hb_011457_140 0.1231848015 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
19 Hb_000320_360 0.1240273676 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
20 Hb_001951_100 0.1251922074 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]

Gene co-expression network

sample Hb_001269_050 Hb_001269_050 Hb_000492_080 Hb_000492_080 Hb_001269_050--Hb_000492_080 Hb_014720_030 Hb_014720_030 Hb_001269_050--Hb_014720_030 Hb_001998_220 Hb_001998_220 Hb_001269_050--Hb_001998_220 Hb_013405_180 Hb_013405_180 Hb_001269_050--Hb_013405_180 Hb_011616_040 Hb_011616_040 Hb_001269_050--Hb_011616_040 Hb_001054_120 Hb_001054_120 Hb_001269_050--Hb_001054_120 Hb_005000_090 Hb_005000_090 Hb_000492_080--Hb_005000_090 Hb_000492_080--Hb_001998_220 Hb_000445_130 Hb_000445_130 Hb_000492_080--Hb_000445_130 Hb_001366_270 Hb_001366_270 Hb_000492_080--Hb_001366_270 Hb_001341_010 Hb_001341_010 Hb_000492_080--Hb_001341_010 Hb_004875_010 Hb_004875_010 Hb_014720_030--Hb_004875_010 Hb_001226_110 Hb_001226_110 Hb_014720_030--Hb_001226_110 Hb_122273_020 Hb_122273_020 Hb_014720_030--Hb_122273_020 Hb_001103_090 Hb_001103_090 Hb_014720_030--Hb_001103_090 Hb_014720_030--Hb_005000_090 Hb_001702_050 Hb_001702_050 Hb_001998_220--Hb_001702_050 Hb_021977_010 Hb_021977_010 Hb_001998_220--Hb_021977_010 Hb_000809_250 Hb_000809_250 Hb_001998_220--Hb_000809_250 Hb_102763_010 Hb_102763_010 Hb_001998_220--Hb_102763_010 Hb_001998_220--Hb_005000_090 Hb_001414_010 Hb_001414_010 Hb_001998_220--Hb_001414_010 Hb_002248_120 Hb_002248_120 Hb_013405_180--Hb_002248_120 Hb_000008_280 Hb_000008_280 Hb_013405_180--Hb_000008_280 Hb_000170_160 Hb_000170_160 Hb_013405_180--Hb_000170_160 Hb_000340_360 Hb_000340_360 Hb_013405_180--Hb_000340_360 Hb_001998_210 Hb_001998_210 Hb_013405_180--Hb_001998_210 Hb_001951_100 Hb_001951_100 Hb_013405_180--Hb_001951_100 Hb_002249_030 Hb_002249_030 Hb_011616_040--Hb_002249_030 Hb_011616_040--Hb_000008_280 Hb_008642_060 Hb_008642_060 Hb_011616_040--Hb_008642_060 Hb_011616_040--Hb_001054_120 Hb_011457_140 Hb_011457_140 Hb_011616_040--Hb_011457_140 Hb_000367_020 Hb_000367_020 Hb_001054_120--Hb_000367_020 Hb_015183_080 Hb_015183_080 Hb_001054_120--Hb_015183_080 Hb_000358_220 Hb_000358_220 Hb_001054_120--Hb_000358_220 Hb_003895_040 Hb_003895_040 Hb_001054_120--Hb_003895_040 Hb_000003_410 Hb_000003_410 Hb_001054_120--Hb_000003_410 Hb_009476_120 Hb_009476_120 Hb_001054_120--Hb_009476_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.5257 13.2717 6.46808 10.3144 3.60994 4.40572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66788 0.958159 1.61269 6.78049 16.2131

CAGE analysis