Hb_001269_060

Information

Type -
Description -
Location Contig1269: 126669-130414
Sequence    

Annotation

kegg
ID rcu:RCOM_0471190
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_012067543.1
description PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
swissprot
ID Q0V7T5
description Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1
trembl
ID A0A067L426
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27021 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable receptor-like protein kinase at1g80640 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08150: 126634-128427 , PASA_asmbl_08152: 129811-130437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_060 0.0 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
2 Hb_001377_120 0.06839178 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
3 Hb_121313_010 0.084425614 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
4 Hb_000645_260 0.0870998884 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
5 Hb_000302_360 0.0886929794 - - beta-carotene hydroxylase, putative [Ricinus communis]
6 Hb_004218_140 0.0964964439 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
7 Hb_027684_010 0.0978488586 - - hypothetical protein RCOM_0504250 [Ricinus communis]
8 Hb_001655_080 0.0982108077 - - Purple acid phosphatase precursor, putative [Ricinus communis]
9 Hb_000120_340 0.105346563 - - Cucumisin precursor, putative [Ricinus communis]
10 Hb_011671_050 0.1098183491 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
11 Hb_002518_040 0.1115725604 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
12 Hb_000349_250 0.1122899223 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
13 Hb_000086_470 0.1141290339 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
14 Hb_003531_050 0.1150818169 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
15 Hb_003666_070 0.1170814637 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
16 Hb_071674_010 0.1171533302 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
17 Hb_007313_030 0.1181719438 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
18 Hb_002053_180 0.1182972042 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
19 Hb_006816_250 0.1185828169 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
20 Hb_000027_160 0.120933674 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_060 Hb_001269_060 Hb_001377_120 Hb_001377_120 Hb_001269_060--Hb_001377_120 Hb_121313_010 Hb_121313_010 Hb_001269_060--Hb_121313_010 Hb_000645_260 Hb_000645_260 Hb_001269_060--Hb_000645_260 Hb_000302_360 Hb_000302_360 Hb_001269_060--Hb_000302_360 Hb_004218_140 Hb_004218_140 Hb_001269_060--Hb_004218_140 Hb_027684_010 Hb_027684_010 Hb_001269_060--Hb_027684_010 Hb_001377_120--Hb_121313_010 Hb_001377_120--Hb_000645_260 Hb_001377_120--Hb_000302_360 Hb_033006_020 Hb_033006_020 Hb_001377_120--Hb_033006_020 Hb_006816_250 Hb_006816_250 Hb_001377_120--Hb_006816_250 Hb_000627_040 Hb_000627_040 Hb_121313_010--Hb_000627_040 Hb_121313_010--Hb_004218_140 Hb_000086_470 Hb_000086_470 Hb_121313_010--Hb_000086_470 Hb_007632_160 Hb_007632_160 Hb_121313_010--Hb_007632_160 Hb_000982_100 Hb_000982_100 Hb_000645_260--Hb_000982_100 Hb_014720_140 Hb_014720_140 Hb_000645_260--Hb_014720_140 Hb_000645_260--Hb_000302_360 Hb_000645_260--Hb_033006_020 Hb_010534_040 Hb_010534_040 Hb_000302_360--Hb_010534_040 Hb_001606_010 Hb_001606_010 Hb_000302_360--Hb_001606_010 Hb_000302_360--Hb_014720_140 Hb_015934_060 Hb_015934_060 Hb_000302_360--Hb_015934_060 Hb_004602_010 Hb_004602_010 Hb_004218_140--Hb_004602_010 Hb_001488_420 Hb_001488_420 Hb_004218_140--Hb_001488_420 Hb_005892_050 Hb_005892_050 Hb_004218_140--Hb_005892_050 Hb_008304_010 Hb_008304_010 Hb_004218_140--Hb_008304_010 Hb_004218_140--Hb_000627_040 Hb_000722_030 Hb_000722_030 Hb_027684_010--Hb_000722_030 Hb_001655_080 Hb_001655_080 Hb_027684_010--Hb_001655_080 Hb_002066_100 Hb_002066_100 Hb_027684_010--Hb_002066_100 Hb_002518_040 Hb_002518_040 Hb_027684_010--Hb_002518_040 Hb_021443_060 Hb_021443_060 Hb_027684_010--Hb_021443_060 Hb_000358_160 Hb_000358_160 Hb_027684_010--Hb_000358_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.124979 1.6527 12.9132 6.66443 0.0138284 0.0647706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201943 0.0794342 0.198474 0.962671 6.07612

CAGE analysis