Hb_001269_070

Information

Type -
Description -
Location Contig1269: 133002-134427
Sequence    

Annotation

kegg
ID rcu:RCOM_0471170
description double-stranded RNA binding protein, putative
nr
ID XP_002527323.1
description double-stranded RNA binding protein, putative [Ricinus communis]
swissprot
ID Q9M8N2
description Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana GN=RTL1 PE=2 SV=1
trembl
ID B9SMV4
description Double-stranded RNA binding protein, putative OS=Ricinus communis GN=RCOM_0471170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08153: 132991-134420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_070 0.0 - - double-stranded RNA binding protein, putative [Ricinus communis]
2 Hb_008179_010 0.1071480443 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
3 Hb_003935_080 0.1298349849 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
4 Hb_000032_140 0.1363652417 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000395_010 0.1419138934 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
6 Hb_003226_200 0.1442761035 - - magnesium/proton exchanger, putative [Ricinus communis]
7 Hb_002486_020 0.1450494831 - - ATP binding protein, putative [Ricinus communis]
8 Hb_019613_010 0.1471332019 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000388_060 0.1471426395 - - fructokinase [Manihot esculenta]
10 Hb_000210_080 0.1495210202 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
11 Hb_000054_030 0.1527331636 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
12 Hb_000594_100 0.1549955762 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
13 Hb_000130_200 0.155504676 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
14 Hb_000866_050 0.1565420387 - - phosphate transporter [Manihot esculenta]
15 Hb_000991_020 0.1605013824 - - amino acid transporter, putative [Ricinus communis]
16 Hb_020378_060 0.1606463232 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
17 Hb_010672_030 0.1632593261 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
18 Hb_000070_110 0.1638076934 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
19 Hb_010577_040 0.1643204242 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
20 Hb_134813_010 0.1666213458 - - aldo/keto reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001269_070 Hb_001269_070 Hb_008179_010 Hb_008179_010 Hb_001269_070--Hb_008179_010 Hb_003935_080 Hb_003935_080 Hb_001269_070--Hb_003935_080 Hb_000032_140 Hb_000032_140 Hb_001269_070--Hb_000032_140 Hb_000395_010 Hb_000395_010 Hb_001269_070--Hb_000395_010 Hb_003226_200 Hb_003226_200 Hb_001269_070--Hb_003226_200 Hb_002486_020 Hb_002486_020 Hb_001269_070--Hb_002486_020 Hb_002475_140 Hb_002475_140 Hb_008179_010--Hb_002475_140 Hb_000388_060 Hb_000388_060 Hb_008179_010--Hb_000388_060 Hb_000086_390 Hb_000086_390 Hb_008179_010--Hb_000086_390 Hb_020378_060 Hb_020378_060 Hb_008179_010--Hb_020378_060 Hb_008179_010--Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_003935_080--Hb_005489_090 Hb_000594_100 Hb_000594_100 Hb_003935_080--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_003935_080--Hb_010577_040 Hb_001124_180 Hb_001124_180 Hb_003935_080--Hb_001124_180 Hb_001792_030 Hb_001792_030 Hb_003935_080--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_003935_080--Hb_000866_050 Hb_007904_040 Hb_007904_040 Hb_000032_140--Hb_007904_040 Hb_000042_290 Hb_000042_290 Hb_000032_140--Hb_000042_290 Hb_000175_050 Hb_000175_050 Hb_000032_140--Hb_000175_050 Hb_000991_020 Hb_000991_020 Hb_000032_140--Hb_000991_020 Hb_001842_020 Hb_001842_020 Hb_000032_140--Hb_001842_020 Hb_000032_140--Hb_001124_180 Hb_000210_080 Hb_000210_080 Hb_000395_010--Hb_000210_080 Hb_000684_200 Hb_000684_200 Hb_000395_010--Hb_000684_200 Hb_004837_100 Hb_004837_100 Hb_000395_010--Hb_004837_100 Hb_004162_270 Hb_004162_270 Hb_000395_010--Hb_004162_270 Hb_000805_010 Hb_000805_010 Hb_000395_010--Hb_000805_010 Hb_158092_100 Hb_158092_100 Hb_000395_010--Hb_158092_100 Hb_033152_110 Hb_033152_110 Hb_003226_200--Hb_033152_110 Hb_000622_060 Hb_000622_060 Hb_003226_200--Hb_000622_060 Hb_000115_360 Hb_000115_360 Hb_003226_200--Hb_000115_360 Hb_000979_260 Hb_000979_260 Hb_003226_200--Hb_000979_260 Hb_002759_220 Hb_002759_220 Hb_003226_200--Hb_002759_220 Hb_000008_060 Hb_000008_060 Hb_003226_200--Hb_000008_060 Hb_002284_220 Hb_002284_220 Hb_002486_020--Hb_002284_220 Hb_000110_060 Hb_000110_060 Hb_002486_020--Hb_000110_060 Hb_002759_070 Hb_002759_070 Hb_002486_020--Hb_002759_070 Hb_002486_020--Hb_003226_200 Hb_000768_150 Hb_000768_150 Hb_002486_020--Hb_000768_150 Hb_005470_030 Hb_005470_030 Hb_002486_020--Hb_005470_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.2929 4.28747 18.0524 25.7401 0.937169 0.590102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.14459 13.0346 7.14923 11.3252 46.2778

CAGE analysis