Hb_001269_100

Information

Type -
Description -
Location Contig1269: 154189-156618
Sequence    

Annotation

kegg
ID egr:104437691
description plasma membrane ATPase 4-like
nr
ID ACN49186.1
description plasma membrane ATPase 1, partial [Triticum aestivum]
swissprot
ID -
description -
trembl
ID D0QMR4
description Plasma membrane ATPase 1 (Fragment) OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0005774
description atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08156: 155002-155582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_100 0.0 - - plasma membrane ATPase 1, partial [Triticum aestivum]
2 Hb_020831_060 0.1429017148 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
3 Hb_000236_210 0.1579443078 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
4 Hb_003893_060 0.1602546212 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003464_100 0.1623879099 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
6 Hb_002164_010 0.1751004986 - - Stellacyanin, putative [Ricinus communis]
7 Hb_140627_040 0.181120112 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
8 Hb_000462_070 0.1816680984 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
9 Hb_019299_020 0.1833769679 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
10 Hb_000011_260 0.1849427669 - - conserved hypothetical protein [Ricinus communis]
11 Hb_034713_010 0.1861940626 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
12 Hb_000220_020 0.1869270434 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]
13 Hb_001300_030 0.1869717348 - - hypothetical protein JCGZ_13871 [Jatropha curcas]
14 Hb_000000_300 0.1878467581 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
15 Hb_135757_030 0.1883837868 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
16 Hb_000152_730 0.1903599707 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003536_090 0.1955154282 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_002374_540 0.196336225 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
19 Hb_001006_300 0.1981078278 - - lipid binding protein, putative [Ricinus communis]
20 Hb_001898_030 0.198932437 - - protein kinase-coding resistance protein [Nicotiana repanda]

Gene co-expression network

sample Hb_001269_100 Hb_001269_100 Hb_020831_060 Hb_020831_060 Hb_001269_100--Hb_020831_060 Hb_000236_210 Hb_000236_210 Hb_001269_100--Hb_000236_210 Hb_003893_060 Hb_003893_060 Hb_001269_100--Hb_003893_060 Hb_003464_100 Hb_003464_100 Hb_001269_100--Hb_003464_100 Hb_002164_010 Hb_002164_010 Hb_001269_100--Hb_002164_010 Hb_140627_040 Hb_140627_040 Hb_001269_100--Hb_140627_040 Hb_000011_260 Hb_000011_260 Hb_020831_060--Hb_000011_260 Hb_004970_100 Hb_004970_100 Hb_020831_060--Hb_004970_100 Hb_019299_020 Hb_019299_020 Hb_020831_060--Hb_019299_020 Hb_000000_300 Hb_000000_300 Hb_020831_060--Hb_000000_300 Hb_020831_060--Hb_000236_210 Hb_003777_150 Hb_003777_150 Hb_020831_060--Hb_003777_150 Hb_000236_210--Hb_003464_100 Hb_000635_020 Hb_000635_020 Hb_000236_210--Hb_000635_020 Hb_000236_210--Hb_003893_060 Hb_000236_210--Hb_019299_020 Hb_000220_020 Hb_000220_020 Hb_000236_210--Hb_000220_020 Hb_008406_050 Hb_008406_050 Hb_003893_060--Hb_008406_050 Hb_003893_060--Hb_003464_100 Hb_004732_070 Hb_004732_070 Hb_003893_060--Hb_004732_070 Hb_001246_080 Hb_001246_080 Hb_003893_060--Hb_001246_080 Hb_000175_600 Hb_000175_600 Hb_003464_100--Hb_000175_600 Hb_004102_180 Hb_004102_180 Hb_003464_100--Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_003464_100--Hb_069384_010 Hb_002326_090 Hb_002326_090 Hb_003464_100--Hb_002326_090 Hb_011218_010 Hb_011218_010 Hb_003464_100--Hb_011218_010 Hb_003536_090 Hb_003536_090 Hb_002164_010--Hb_003536_090 Hb_002164_010--Hb_000236_210 Hb_000375_140 Hb_000375_140 Hb_002164_010--Hb_000375_140 Hb_002164_010--Hb_020831_060 Hb_000816_190 Hb_000816_190 Hb_002164_010--Hb_000816_190 Hb_034713_010 Hb_034713_010 Hb_140627_040--Hb_034713_010 Hb_003680_240 Hb_003680_240 Hb_140627_040--Hb_003680_240 Hb_009367_070 Hb_009367_070 Hb_140627_040--Hb_009367_070 Hb_051212_020 Hb_051212_020 Hb_140627_040--Hb_051212_020 Hb_000207_060 Hb_000207_060 Hb_140627_040--Hb_000207_060 Hb_009062_020 Hb_009062_020 Hb_140627_040--Hb_009062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.149911 0.0967397 0.349032 2.16579 0.0188127 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0625911 0.094662 0.139235

CAGE analysis