Hb_001269_140

Information

Type -
Description -
Location Contig1269: 178481-185443
Sequence    

Annotation

kegg
ID rcu:RCOM_0471030
description nucleoporin, putative
nr
ID XP_012067537.1
description PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
swissprot
ID Q8LLD0
description Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana GN=NUP96 PE=1 SV=1
trembl
ID A0A067L0P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27015 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup96 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08164: 181698-183211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_140 0.0 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
2 Hb_002307_280 0.0774101895 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
3 Hb_001761_130 0.0851847935 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
4 Hb_005081_020 0.0904616848 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
5 Hb_001105_160 0.0907816812 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
6 Hb_001434_080 0.0947027926 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
7 Hb_001123_050 0.0955566188 - - conserved hypothetical protein [Ricinus communis]
8 Hb_083799_010 0.0977456117 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_041327_010 0.0980021676 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
10 Hb_000230_260 0.0985274015 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
11 Hb_002693_060 0.0989217304 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
12 Hb_003544_030 0.0995516958 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
13 Hb_005663_110 0.1029771907 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
14 Hb_071130_010 0.1035236189 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
15 Hb_000069_120 0.1042454713 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
16 Hb_002391_210 0.1042713062 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
17 Hb_011016_050 0.1044210281 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
18 Hb_172632_110 0.1050804382 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
19 Hb_001009_080 0.1055250664 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000402_190 0.1058680408 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_140 Hb_001269_140 Hb_002307_280 Hb_002307_280 Hb_001269_140--Hb_002307_280 Hb_001761_130 Hb_001761_130 Hb_001269_140--Hb_001761_130 Hb_005081_020 Hb_005081_020 Hb_001269_140--Hb_005081_020 Hb_001105_160 Hb_001105_160 Hb_001269_140--Hb_001105_160 Hb_001434_080 Hb_001434_080 Hb_001269_140--Hb_001434_080 Hb_001123_050 Hb_001123_050 Hb_001269_140--Hb_001123_050 Hb_002307_280--Hb_001123_050 Hb_002307_280--Hb_001434_080 Hb_002307_280--Hb_001105_160 Hb_017387_010 Hb_017387_010 Hb_002307_280--Hb_017387_010 Hb_001258_110 Hb_001258_110 Hb_002307_280--Hb_001258_110 Hb_172632_110 Hb_172632_110 Hb_001761_130--Hb_172632_110 Hb_006831_040 Hb_006831_040 Hb_001761_130--Hb_006831_040 Hb_017358_040 Hb_017358_040 Hb_001761_130--Hb_017358_040 Hb_002477_090 Hb_002477_090 Hb_001761_130--Hb_002477_090 Hb_001232_010 Hb_001232_010 Hb_001761_130--Hb_001232_010 Hb_010174_110 Hb_010174_110 Hb_001761_130--Hb_010174_110 Hb_083799_010 Hb_083799_010 Hb_005081_020--Hb_083799_010 Hb_000692_160 Hb_000692_160 Hb_005081_020--Hb_000692_160 Hb_075315_010 Hb_075315_010 Hb_005081_020--Hb_075315_010 Hb_002391_210 Hb_002391_210 Hb_005081_020--Hb_002391_210 Hb_003906_170 Hb_003906_170 Hb_005081_020--Hb_003906_170 Hb_011287_050 Hb_011287_050 Hb_001105_160--Hb_011287_050 Hb_041327_010 Hb_041327_010 Hb_001105_160--Hb_041327_010 Hb_005568_040 Hb_005568_040 Hb_001105_160--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_001105_160--Hb_012092_060 Hb_071130_010 Hb_071130_010 Hb_001105_160--Hb_071130_010 Hb_010809_010 Hb_010809_010 Hb_001105_160--Hb_010809_010 Hb_005663_110 Hb_005663_110 Hb_001434_080--Hb_005663_110 Hb_003544_030 Hb_003544_030 Hb_001434_080--Hb_003544_030 Hb_001500_140 Hb_001500_140 Hb_001434_080--Hb_001500_140 Hb_011016_050 Hb_011016_050 Hb_001434_080--Hb_011016_050 Hb_002989_020 Hb_002989_020 Hb_001434_080--Hb_002989_020 Hb_000327_250 Hb_000327_250 Hb_001434_080--Hb_000327_250 Hb_001123_050--Hb_002477_090 Hb_000862_040 Hb_000862_040 Hb_001123_050--Hb_000862_040 Hb_000213_120 Hb_000213_120 Hb_001123_050--Hb_000213_120 Hb_023226_080 Hb_023226_080 Hb_001123_050--Hb_023226_080 Hb_005542_140 Hb_005542_140 Hb_001123_050--Hb_005542_140 Hb_127743_010 Hb_127743_010 Hb_001123_050--Hb_127743_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.34742 7.81298 3.51569 7.6094 5.61863 6.11043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33423 3.63455 5.70186 11.9698 3.11815

CAGE analysis