Hb_001269_150

Information

Type -
Description -
Location Contig1269: 187356-192820
Sequence    

Annotation

kegg
ID rcu:RCOM_0471020
description Defective in cullin neddylation protein, putative
nr
ID XP_012067535.1
description PREDICTED: DCN1-like protein 4 [Jatropha curcas]
swissprot
ID Q8CCA0
description DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1
trembl
ID A0A067L0J9
description Defective in cullin neddylation protein OS=Jatropha curcas GN=JCGZ_27014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08165: 187385-192743 , PASA_asmbl_08166: 187334-192601 , PASA_asmbl_08170: 187577-192613
cDNA
(Sanger)
(ID:Location)		 028_K05.ab1: 187426-192193 , 033_A06.ab1: 187420-192246 , 034_J17.ab1: 187577-192248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_150 0.0 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
2 Hb_007441_340 0.0750018482 - - protein with unknown function [Ricinus communis]
3 Hb_001493_100 0.0751492634 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
4 Hb_002400_220 0.079333294 - - Vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_000172_120 0.0803729884 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
6 Hb_000732_260 0.082144397 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
7 Hb_004813_010 0.0871443919 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000282_060 0.0884932839 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
9 Hb_003688_100 0.0887798698 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
10 Hb_027892_060 0.0934987362 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
11 Hb_001514_020 0.0950645722 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
12 Hb_118977_020 0.0981665681 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
13 Hb_033491_010 0.0982422614 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
14 Hb_000359_170 0.0993175099 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
15 Hb_000771_110 0.1004506424 - - protein phosphatase 2C [Hevea brasiliensis]
16 Hb_006569_020 0.1015465182 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
17 Hb_000500_130 0.1020638129 - - small GTPase [Hevea brasiliensis]
18 Hb_159558_030 0.1024291624 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
19 Hb_000538_020 0.1058635957 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
20 Hb_004096_170 0.1062430105 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_150 Hb_001269_150 Hb_007441_340 Hb_007441_340 Hb_001269_150--Hb_007441_340 Hb_001493_100 Hb_001493_100 Hb_001269_150--Hb_001493_100 Hb_002400_220 Hb_002400_220 Hb_001269_150--Hb_002400_220 Hb_000172_120 Hb_000172_120 Hb_001269_150--Hb_000172_120 Hb_000732_260 Hb_000732_260 Hb_001269_150--Hb_000732_260 Hb_004813_010 Hb_004813_010 Hb_001269_150--Hb_004813_010 Hb_007441_340--Hb_000172_120 Hb_004096_170 Hb_004096_170 Hb_007441_340--Hb_004096_170 Hb_003453_020 Hb_003453_020 Hb_007441_340--Hb_003453_020 Hb_007441_340--Hb_002400_220 Hb_000258_410 Hb_000258_410 Hb_007441_340--Hb_000258_410 Hb_001493_100--Hb_004813_010 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_000714_020 Hb_000714_020 Hb_001493_100--Hb_000714_020 Hb_000784_090 Hb_000784_090 Hb_001493_100--Hb_000784_090 Hb_159558_030 Hb_159558_030 Hb_002400_220--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_002400_220--Hb_000500_130 Hb_033491_010 Hb_033491_010 Hb_002400_220--Hb_033491_010 Hb_000359_170 Hb_000359_170 Hb_002400_220--Hb_000359_170 Hb_000172_120--Hb_004096_170 Hb_000172_120--Hb_003453_020 Hb_000172_120--Hb_002400_220 Hb_002377_040 Hb_002377_040 Hb_000172_120--Hb_002377_040 Hb_000732_260--Hb_033491_010 Hb_000282_060 Hb_000282_060 Hb_000732_260--Hb_000282_060 Hb_002249_140 Hb_002249_140 Hb_000732_260--Hb_002249_140 Hb_000272_100 Hb_000272_100 Hb_000732_260--Hb_000272_100 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150 Hb_001514_020 Hb_001514_020 Hb_004813_010--Hb_001514_020 Hb_004813_010--Hb_004096_170 Hb_002044_090 Hb_002044_090 Hb_004813_010--Hb_002044_090 Hb_000847_070 Hb_000847_070 Hb_004813_010--Hb_000847_070 Hb_000062_230 Hb_000062_230 Hb_004813_010--Hb_000062_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
339.009 55.4698 73.1082 53.5978 267.891 275.23
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
359.574 197.68 151.008 38.7662 15.2356

CAGE analysis