Hb_001269_160

Information

Type -
Description -
Location Contig1269: 195898-197247
Sequence    

Annotation

kegg
ID rcu:RCOM_0471010
description hypothetical protein
nr
ID XP_002527317.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID B9SMU8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0471010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08171: 197165-197264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002499_030 0.0648902713 - - receptor-kinase, putative [Ricinus communis]
3 Hb_000413_030 0.0652163059 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
4 Hb_009476_080 0.068878423 - - BnaA03g18920D [Brassica napus]
5 Hb_011224_070 0.0714559808 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
6 Hb_064047_020 0.072114305 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
7 Hb_003747_160 0.0723474101 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003376_060 0.0783474266 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
9 Hb_001051_060 0.0791957141 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
10 Hb_015807_090 0.082640627 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
11 Hb_070771_010 0.0831552977 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
12 Hb_001096_010 0.0852491482 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
13 Hb_011912_010 0.0852857936 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_001511_220 0.086074096 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
15 Hb_001500_090 0.0874407272 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004225_120 0.0882834342 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
17 Hb_002750_030 0.0911623195 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
18 Hb_002078_180 0.0922403037 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
19 Hb_000964_080 0.0945114608 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
20 Hb_005686_040 0.0946230714 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001269_160 Hb_001269_160 Hb_002499_030 Hb_002499_030 Hb_001269_160--Hb_002499_030 Hb_000413_030 Hb_000413_030 Hb_001269_160--Hb_000413_030 Hb_009476_080 Hb_009476_080 Hb_001269_160--Hb_009476_080 Hb_011224_070 Hb_011224_070 Hb_001269_160--Hb_011224_070 Hb_064047_020 Hb_064047_020 Hb_001269_160--Hb_064047_020 Hb_003747_160 Hb_003747_160 Hb_001269_160--Hb_003747_160 Hb_001096_010 Hb_001096_010 Hb_002499_030--Hb_001096_010 Hb_005614_020 Hb_005614_020 Hb_002499_030--Hb_005614_020 Hb_070771_010 Hb_070771_010 Hb_002499_030--Hb_070771_010 Hb_002499_030--Hb_003747_160 Hb_003638_020 Hb_003638_020 Hb_002499_030--Hb_003638_020 Hb_011912_010 Hb_011912_010 Hb_000413_030--Hb_011912_010 Hb_000413_030--Hb_064047_020 Hb_000964_080 Hb_000964_080 Hb_000413_030--Hb_000964_080 Hb_003376_060 Hb_003376_060 Hb_000413_030--Hb_003376_060 Hb_000037_150 Hb_000037_150 Hb_000413_030--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_000413_030--Hb_001307_180 Hb_002078_180 Hb_002078_180 Hb_009476_080--Hb_002078_180 Hb_015807_090 Hb_015807_090 Hb_009476_080--Hb_015807_090 Hb_009476_080--Hb_003747_160 Hb_002835_360 Hb_002835_360 Hb_009476_080--Hb_002835_360 Hb_005686_040 Hb_005686_040 Hb_009476_080--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_009476_080--Hb_001051_060 Hb_011224_070--Hb_003747_160 Hb_011224_070--Hb_003376_060 Hb_004225_120 Hb_004225_120 Hb_011224_070--Hb_004225_120 Hb_001511_220 Hb_001511_220 Hb_011224_070--Hb_001511_220 Hb_011224_070--Hb_001096_010 Hb_011224_070--Hb_005614_020 Hb_064047_020--Hb_011912_010 Hb_002085_060 Hb_002085_060 Hb_064047_020--Hb_002085_060 Hb_002750_030 Hb_002750_030 Hb_064047_020--Hb_002750_030 Hb_003645_040 Hb_003645_040 Hb_064047_020--Hb_003645_040 Hb_064047_020--Hb_070771_010 Hb_003747_160--Hb_001051_060 Hb_003747_160--Hb_015807_090 Hb_003747_160--Hb_005686_040 Hb_003747_160--Hb_004225_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.160501 0.258165 3.61852 0 0.0290602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.072441 1.77451

CAGE analysis