Hb_001269_170

Information

Type -
Description -
Location Contig1269: 208892-211178
Sequence    

Annotation

kegg
ID rcu:RCOM_0470990
description hypothetical protein
nr
ID XP_012067530.1
description PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
swissprot
ID Q8W487
description Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=2 SV=1
trembl
ID A0A067L416
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27011 PE=4 SV=1
Gene Ontology
ID GO:0005759
description mitochondrial glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_170 0.0 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
2 Hb_001143_080 0.0766194036 - - PREDICTED: F-box protein 7 [Jatropha curcas]
3 Hb_004375_100 0.0832026922 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
4 Hb_012753_160 0.0907565667 - - ara4-interacting protein, putative [Ricinus communis]
5 Hb_000136_170 0.0942895652 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
6 Hb_005463_040 0.0951699527 - - signal transducer, putative [Ricinus communis]
7 Hb_007044_060 0.0965911485 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000072_080 0.0970130096 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
9 Hb_156947_010 0.0970882753 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
10 Hb_005618_140 0.098060631 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
11 Hb_000384_100 0.0986154826 - - hydrolase, putative [Ricinus communis]
12 Hb_000363_480 0.0998173807 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
13 Hb_001141_030 0.0998843688 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
14 Hb_010068_020 0.1000519003 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
15 Hb_003994_250 0.1010210621 - - membrane associated ring finger 1,8, putative [Ricinus communis]
16 Hb_000230_510 0.1010816402 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
17 Hb_005883_100 0.1011241371 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
18 Hb_001279_360 0.1022227756 - - protein with unknown function [Ricinus communis]
19 Hb_000265_050 0.1026059309 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
20 Hb_002925_030 0.1028433783 - - 40S ribosomal protein S16B [Hevea brasiliensis]

Gene co-expression network

sample Hb_001269_170 Hb_001269_170 Hb_001143_080 Hb_001143_080 Hb_001269_170--Hb_001143_080 Hb_004375_100 Hb_004375_100 Hb_001269_170--Hb_004375_100 Hb_012753_160 Hb_012753_160 Hb_001269_170--Hb_012753_160 Hb_000136_170 Hb_000136_170 Hb_001269_170--Hb_000136_170 Hb_005463_040 Hb_005463_040 Hb_001269_170--Hb_005463_040 Hb_007044_060 Hb_007044_060 Hb_001269_170--Hb_007044_060 Hb_001638_020 Hb_001638_020 Hb_001143_080--Hb_001638_020 Hb_001141_030 Hb_001141_030 Hb_001143_080--Hb_001141_030 Hb_001998_050 Hb_001998_050 Hb_001143_080--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_001143_080--Hb_000227_230 Hb_000072_080 Hb_000072_080 Hb_001143_080--Hb_000072_080 Hb_010068_020 Hb_010068_020 Hb_004375_100--Hb_010068_020 Hb_002701_240 Hb_002701_240 Hb_004375_100--Hb_002701_240 Hb_002713_070 Hb_002713_070 Hb_004375_100--Hb_002713_070 Hb_001814_050 Hb_001814_050 Hb_004375_100--Hb_001814_050 Hb_156947_010 Hb_156947_010 Hb_004375_100--Hb_156947_010 Hb_001505_020 Hb_001505_020 Hb_004375_100--Hb_001505_020 Hb_012675_060 Hb_012675_060 Hb_012753_160--Hb_012675_060 Hb_001140_060 Hb_001140_060 Hb_012753_160--Hb_001140_060 Hb_012753_160--Hb_000072_080 Hb_012753_160--Hb_001998_050 Hb_003455_040 Hb_003455_040 Hb_012753_160--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_012753_160--Hb_000574_480 Hb_000136_170--Hb_002713_070 Hb_000134_070 Hb_000134_070 Hb_000136_170--Hb_000134_070 Hb_000136_170--Hb_001505_020 Hb_003623_050 Hb_003623_050 Hb_000136_170--Hb_003623_050 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050 Hb_004567_120 Hb_004567_120 Hb_000136_170--Hb_004567_120 Hb_008221_140 Hb_008221_140 Hb_005463_040--Hb_008221_140 Hb_086639_030 Hb_086639_030 Hb_005463_040--Hb_086639_030 Hb_002183_090 Hb_002183_090 Hb_005463_040--Hb_002183_090 Hb_005463_040--Hb_012675_060 Hb_006031_020 Hb_006031_020 Hb_005463_040--Hb_006031_020 Hb_000384_100 Hb_000384_100 Hb_005463_040--Hb_000384_100 Hb_034406_020 Hb_034406_020 Hb_007044_060--Hb_034406_020 Hb_002397_070 Hb_002397_070 Hb_007044_060--Hb_002397_070 Hb_002231_030 Hb_002231_030 Hb_007044_060--Hb_002231_030 Hb_007044_060--Hb_000072_080 Hb_001287_030 Hb_001287_030 Hb_007044_060--Hb_001287_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.98675 0.754881 0.627548 1.17776 1.17401 1.67216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83825 5.55385 2.62542 1.60682 1.01876

CAGE analysis