Hb_001269_180

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1269: 213657-214517
Sequence    

Annotation

kegg
ID rcu:RCOM_0470980
description zinc finger protein, putative
nr
ID XP_002527314.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q42485
description Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1
trembl
ID B9SMU5
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0470980 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_180 0.0 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
2 Hb_001369_480 0.0723223498 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
3 Hb_000336_120 0.0935874814 - - PREDICTED: mavicyanin [Populus euphratica]
4 Hb_006717_060 0.0936886808 - - PREDICTED: peroxidase 42 [Jatropha curcas]
5 Hb_000531_030 0.0981564366 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005116_150 0.0984162571 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
7 Hb_012114_090 0.0987813841 - - tubulin beta chain, putative [Ricinus communis]
8 Hb_000699_220 0.1020676398 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
9 Hb_001104_060 0.1026638962 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
10 Hb_000160_010 0.1045465449 - - PREDICTED: uncharacterized protein LOC105638816 [Jatropha curcas]
11 Hb_006153_140 0.1055416982 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
12 Hb_001456_030 0.1068718571 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
13 Hb_005440_040 0.1070478042 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
14 Hb_004586_440 0.1096319562 - - Blue copper protein precursor, putative [Ricinus communis]
15 Hb_015175_070 0.1114587702 - - cysteine protease, putative [Ricinus communis]
16 Hb_000310_050 0.116947023 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_002997_150 0.1189584638 - - hypothetical protein RCOM_1406750 [Ricinus communis]
18 Hb_001349_040 0.1195557516 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
19 Hb_005616_020 0.1200808869 - - kinase, putative [Ricinus communis]
20 Hb_001225_050 0.1201132596 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001269_180 Hb_001269_180 Hb_001369_480 Hb_001369_480 Hb_001269_180--Hb_001369_480 Hb_000336_120 Hb_000336_120 Hb_001269_180--Hb_000336_120 Hb_006717_060 Hb_006717_060 Hb_001269_180--Hb_006717_060 Hb_000531_030 Hb_000531_030 Hb_001269_180--Hb_000531_030 Hb_005116_150 Hb_005116_150 Hb_001269_180--Hb_005116_150 Hb_012114_090 Hb_012114_090 Hb_001269_180--Hb_012114_090 Hb_001369_480--Hb_012114_090 Hb_001369_480--Hb_000336_120 Hb_055276_010 Hb_055276_010 Hb_001369_480--Hb_055276_010 Hb_001369_480--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_001369_480--Hb_000699_220 Hb_000336_120--Hb_012114_090 Hb_015175_070 Hb_015175_070 Hb_000336_120--Hb_015175_070 Hb_000310_050 Hb_000310_050 Hb_000336_120--Hb_000310_050 Hb_000336_120--Hb_000699_220 Hb_000336_120--Hb_006717_060 Hb_006717_060--Hb_000699_220 Hb_000497_030 Hb_000497_030 Hb_006717_060--Hb_000497_030 Hb_003580_020 Hb_003580_020 Hb_006717_060--Hb_003580_020 Hb_006717_060--Hb_012114_090 Hb_001349_040 Hb_001349_040 Hb_006717_060--Hb_001349_040 Hb_001104_060 Hb_001104_060 Hb_000531_030--Hb_001104_060 Hb_005440_040 Hb_005440_040 Hb_000531_030--Hb_005440_040 Hb_000227_360 Hb_000227_360 Hb_000531_030--Hb_000227_360 Hb_009151_010 Hb_009151_010 Hb_000531_030--Hb_009151_010 Hb_001456_030 Hb_001456_030 Hb_000531_030--Hb_001456_030 Hb_000531_030--Hb_005116_150 Hb_007760_020 Hb_007760_020 Hb_005116_150--Hb_007760_020 Hb_005116_150--Hb_009151_010 Hb_007113_060 Hb_007113_060 Hb_005116_150--Hb_007113_060 Hb_002311_030 Hb_002311_030 Hb_005116_150--Hb_002311_030 Hb_010142_060 Hb_010142_060 Hb_005116_150--Hb_010142_060 Hb_012114_090--Hb_000699_220 Hb_012114_090--Hb_000310_050 Hb_012114_090--Hb_001456_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187222 0.245983 1.54861 9.50261 0 0.0471195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0583805 3.0199

CAGE analysis