Hb_001269_200

Information

Type -
Description -
Location Contig1269: 236073-237873
Sequence    

Annotation

kegg
ID pop:POPTR_0001s14810g
description POPTRDRAFT_178844; pentatricopeptide repeat-containing family protein
nr
ID XP_002299265.2
description pentatricopeptide repeat-containing family protein [Populus trichocarpa]
swissprot
ID Q9SGQ6
description Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2
trembl
ID B9GMC2
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0001s14810g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08175: 236114-265314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_200 0.0 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
2 Hb_016734_090 0.0794784279 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
3 Hb_000563_330 0.0890183354 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_011918_050 0.0892754599 - - -
5 Hb_039605_010 0.0924725367 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
6 Hb_002739_130 0.0929261718 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
7 Hb_006452_160 0.0929508272 - - structural constituent of ribosome, putative [Ricinus communis]
8 Hb_004631_190 0.1014076205 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
9 Hb_000173_150 0.1021748303 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
10 Hb_001807_010 0.1028413352 - - hypothetical protein MTR_6g077630 [Medicago truncatula]
11 Hb_000983_120 0.1037542813 - - cyclin-dependent protein kinase, putative [Ricinus communis]
12 Hb_005054_190 0.106596804 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
13 Hb_080147_040 0.1070495243 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
14 Hb_002928_010 0.1085846301 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
15 Hb_000661_020 0.1108484303 - - BnaC08g27190D [Brassica napus]
16 Hb_003086_190 0.111329379 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
17 Hb_000045_320 0.1119181371 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
18 Hb_000336_110 0.1126928229 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
19 Hb_185516_010 0.1142802448 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
20 Hb_000336_270 0.117607877 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001269_200 Hb_001269_200 Hb_016734_090 Hb_016734_090 Hb_001269_200--Hb_016734_090 Hb_000563_330 Hb_000563_330 Hb_001269_200--Hb_000563_330 Hb_011918_050 Hb_011918_050 Hb_001269_200--Hb_011918_050 Hb_039605_010 Hb_039605_010 Hb_001269_200--Hb_039605_010 Hb_002739_130 Hb_002739_130 Hb_001269_200--Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_001269_200--Hb_006452_160 Hb_016734_090--Hb_002739_130 Hb_016734_090--Hb_011918_050 Hb_016734_090--Hb_006452_160 Hb_016734_090--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_016734_090--Hb_000661_020 Hb_000563_330--Hb_006452_160 Hb_000563_330--Hb_002739_130 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_011918_050--Hb_002739_130 Hb_000023_320 Hb_000023_320 Hb_011918_050--Hb_000023_320 Hb_005288_080 Hb_005288_080 Hb_011918_050--Hb_005288_080 Hb_005054_190 Hb_005054_190 Hb_011918_050--Hb_005054_190 Hb_002928_010 Hb_002928_010 Hb_039605_010--Hb_002928_010 Hb_000983_120 Hb_000983_120 Hb_039605_010--Hb_000983_120 Hb_000287_050 Hb_000287_050 Hb_039605_010--Hb_000287_050 Hb_039605_010--Hb_003994_140 Hb_011249_030 Hb_011249_030 Hb_039605_010--Hb_011249_030 Hb_002739_130--Hb_006452_160 Hb_002739_130--Hb_000661_020 Hb_000679_340 Hb_000679_340 Hb_002739_130--Hb_000679_340 Hb_002045_150 Hb_002045_150 Hb_006452_160--Hb_002045_150 Hb_005188_060 Hb_005188_060 Hb_006452_160--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_006452_160--Hb_000140_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.042 30.9449 38.0449 15.1476 26.8867 25.4254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.72024 10.5011 8.59388 11.0472 9.03714

CAGE analysis