Hb_001269_210

Information

Type -
Description -
Location Contig1269: 250122-265409
Sequence    

Annotation

kegg
ID rcu:RCOM_0470960
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067524.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
swissprot
ID O04491
description Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
trembl
ID A0A067LBW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27008 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08175: 236114-265314 , PASA_asmbl_08176: 252649-254872 , PASA_asmbl_08177: 262091-265371 , PASA_asmbl_08180: 256003-257097
cDNA
(Sanger)
(ID:Location)		 036_L23.ab1: 264660-265371

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_210 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
2 Hb_007062_020 0.0626733823 - - gcn4-complementing protein, putative [Ricinus communis]
3 Hb_001268_280 0.0718008509 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000162_030 0.0797340643 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
5 Hb_002276_240 0.0813614939 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
6 Hb_012215_010 0.0818602559 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
7 Hb_002267_140 0.0825818928 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
8 Hb_000252_050 0.0872804139 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
9 Hb_001147_110 0.0887556409 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
10 Hb_000933_010 0.0893542685 - - -
11 Hb_000035_410 0.0898337736 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
12 Hb_001635_160 0.0902947156 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
13 Hb_004129_070 0.0903036612 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
14 Hb_000890_060 0.0919906234 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
15 Hb_000786_040 0.0929149954 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
16 Hb_009296_010 0.0940614675 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
17 Hb_005321_020 0.0953833731 - - splicing factor-related family protein [Populus trichocarpa]
18 Hb_009112_010 0.0955716076 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
19 Hb_001635_040 0.0958180772 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
20 Hb_011310_130 0.0966419713 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001269_210 Hb_001269_210 Hb_007062_020 Hb_007062_020 Hb_001269_210--Hb_007062_020 Hb_001268_280 Hb_001268_280 Hb_001269_210--Hb_001268_280 Hb_000162_030 Hb_000162_030 Hb_001269_210--Hb_000162_030 Hb_002276_240 Hb_002276_240 Hb_001269_210--Hb_002276_240 Hb_012215_010 Hb_012215_010 Hb_001269_210--Hb_012215_010 Hb_002267_140 Hb_002267_140 Hb_001269_210--Hb_002267_140 Hb_000785_040 Hb_000785_040 Hb_007062_020--Hb_000785_040 Hb_027380_140 Hb_027380_140 Hb_007062_020--Hb_027380_140 Hb_000470_070 Hb_000470_070 Hb_007062_020--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_007062_020--Hb_009296_010 Hb_012053_080 Hb_012053_080 Hb_007062_020--Hb_012053_080 Hb_000914_120 Hb_000914_120 Hb_001268_280--Hb_000914_120 Hb_001268_280--Hb_002267_140 Hb_001268_280--Hb_000162_030 Hb_001318_070 Hb_001318_070 Hb_001268_280--Hb_001318_070 Hb_002732_040 Hb_002732_040 Hb_001268_280--Hb_002732_040 Hb_000243_210 Hb_000243_210 Hb_001268_280--Hb_000243_210 Hb_001635_040 Hb_001635_040 Hb_000162_030--Hb_001635_040 Hb_001147_110 Hb_001147_110 Hb_000162_030--Hb_001147_110 Hb_008568_020 Hb_008568_020 Hb_000162_030--Hb_008568_020 Hb_004357_020 Hb_004357_020 Hb_000162_030--Hb_004357_020 Hb_000162_030--Hb_002276_240 Hb_004129_070 Hb_004129_070 Hb_002276_240--Hb_004129_070 Hb_009083_070 Hb_009083_070 Hb_002276_240--Hb_009083_070 Hb_002276_240--Hb_002267_140 Hb_002276_240--Hb_001147_110 Hb_001767_140 Hb_001767_140 Hb_002276_240--Hb_001767_140 Hb_008253_030 Hb_008253_030 Hb_002276_240--Hb_008253_030 Hb_002539_110 Hb_002539_110 Hb_012215_010--Hb_002539_110 Hb_010272_010 Hb_010272_010 Hb_012215_010--Hb_010272_010 Hb_000640_070 Hb_000640_070 Hb_012215_010--Hb_000640_070 Hb_000362_170 Hb_000362_170 Hb_012215_010--Hb_000362_170 Hb_000664_110 Hb_000664_110 Hb_012215_010--Hb_000664_110 Hb_001005_030 Hb_001005_030 Hb_012215_010--Hb_001005_030 Hb_002267_140--Hb_008253_030 Hb_002267_140--Hb_001767_140 Hb_138596_010 Hb_138596_010 Hb_002267_140--Hb_138596_010 Hb_002253_080 Hb_002253_080 Hb_002267_140--Hb_002253_080 Hb_002843_120 Hb_002843_120 Hb_002267_140--Hb_002843_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.00036 5.44828 4.57619 5.68483 4.45267 7.15643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14062 2.4314 4.07254 4.33475 4.91365

CAGE analysis