Hb_001269_230

Information

Type -
Description -
Location Contig1269: 266756-270337
Sequence    

Annotation

kegg
ID rcu:RCOM_0470940
description hypothetical protein
nr
ID XP_012067520.1
description PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
swissprot
ID Q8C2A2
description tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus GN=Tsen54 PE=2 SV=2
trembl
ID A0A067L0N0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27005 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08182: 266834-269047 , PASA_asmbl_08184: 270321-270589
cDNA
(Sanger)
(ID:Location)		 015_K08r.ab1: 269685-272826

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_230 0.0 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
2 Hb_001005_030 0.0568259581 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
3 Hb_001188_060 0.0584174479 - - -
4 Hb_004007_220 0.0632312432 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
5 Hb_109980_010 0.07027826 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
6 Hb_000373_080 0.0715044506 - - PREDICTED: serine decarboxylase [Jatropha curcas]
7 Hb_001584_140 0.0744708624 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
8 Hb_001635_040 0.0751671292 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
9 Hb_010407_050 0.0753167008 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
10 Hb_000136_110 0.0770261908 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
11 Hb_000007_280 0.0782250373 - - hypothetical protein VITISV_000066 [Vitis vinifera]
12 Hb_027472_120 0.0793378159 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_002398_030 0.0806604239 - - amino acid binding protein, putative [Ricinus communis]
14 Hb_019654_040 0.0807703857 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
15 Hb_011310_130 0.0808405416 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
16 Hb_000208_210 0.0813419816 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
17 Hb_002248_110 0.0817478763 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
18 Hb_002684_040 0.0817496174 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
19 Hb_002272_130 0.0832126105 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
20 Hb_009296_010 0.0840799218 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_230 Hb_001269_230 Hb_001005_030 Hb_001005_030 Hb_001269_230--Hb_001005_030 Hb_001188_060 Hb_001188_060 Hb_001269_230--Hb_001188_060 Hb_004007_220 Hb_004007_220 Hb_001269_230--Hb_004007_220 Hb_109980_010 Hb_109980_010 Hb_001269_230--Hb_109980_010 Hb_000373_080 Hb_000373_080 Hb_001269_230--Hb_000373_080 Hb_001584_140 Hb_001584_140 Hb_001269_230--Hb_001584_140 Hb_000362_170 Hb_000362_170 Hb_001005_030--Hb_000362_170 Hb_001005_030--Hb_000373_080 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_000208_260 Hb_000208_260 Hb_001188_060--Hb_000208_260 Hb_001205_250 Hb_001205_250 Hb_001188_060--Hb_001205_250 Hb_001188_060--Hb_001584_140 Hb_002398_030 Hb_002398_030 Hb_001188_060--Hb_002398_030 Hb_002248_110 Hb_002248_110 Hb_001188_060--Hb_002248_110 Hb_002997_080 Hb_002997_080 Hb_004007_220--Hb_002997_080 Hb_027472_120 Hb_027472_120 Hb_004007_220--Hb_027472_120 Hb_001047_220 Hb_001047_220 Hb_004007_220--Hb_001047_220 Hb_009646_030 Hb_009646_030 Hb_004007_220--Hb_009646_030 Hb_002684_040 Hb_002684_040 Hb_004007_220--Hb_002684_040 Hb_015807_050 Hb_015807_050 Hb_109980_010--Hb_015807_050 Hb_006483_110 Hb_006483_110 Hb_109980_010--Hb_006483_110 Hb_006501_090 Hb_006501_090 Hb_109980_010--Hb_006501_090 Hb_001655_030 Hb_001655_030 Hb_109980_010--Hb_001655_030 Hb_007657_010 Hb_007657_010 Hb_109980_010--Hb_007657_010 Hb_000935_010 Hb_000935_010 Hb_109980_010--Hb_000935_010 Hb_000373_080--Hb_003186_020 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_001377_310 Hb_001377_310 Hb_000373_080--Hb_001377_310 Hb_000214_050 Hb_000214_050 Hb_000373_080--Hb_000214_050 Hb_000373_080--Hb_000362_170 Hb_000637_150 Hb_000637_150 Hb_001584_140--Hb_000637_150 Hb_000136_110 Hb_000136_110 Hb_001584_140--Hb_000136_110 Hb_001584_140--Hb_001205_250 Hb_000441_220 Hb_000441_220 Hb_001584_140--Hb_000441_220 Hb_001205_120 Hb_001205_120 Hb_001584_140--Hb_001205_120 Hb_001518_080 Hb_001518_080 Hb_001584_140--Hb_001518_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.04923 3.98939 8.48097 5.62171 6.8776 8.37251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26599 3.90648 4.91484 5.68714 5.36215

CAGE analysis