Hb_001269_240

Information

Type -
Description -
Location Contig1269: 269690-273442
Sequence    

Annotation

kegg
ID pop:POPTR_0003s17930g
description POPTRDRAFT_757987; aquaporin NIP6.1 family protein
nr
ID XP_002304723.1
description aquaporin NIP6.1 family protein [Populus trichocarpa]
swissprot
ID Q9SAI4
description Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1
trembl
ID B9GVJ4
description Aquaporin NIP6.1 family protein OS=Populus trichocarpa GN=POPTR_0003s17930g PE=3 SV=1
Gene Ontology
ID GO:0005886
description aquaporin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08183: 269685-273390 , PASA_asmbl_08185: 270611-270802
cDNA
(Sanger)
(ID:Location)		 015_K08.ab1: 270143-273367 , 017_I13.ab1: 270148-273367

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_240 0.0 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
2 Hb_007257_070 0.062442442 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
3 Hb_000574_230 0.0723734816 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
4 Hb_026050_010 0.0966913096 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_009557_080 0.0980634125 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
6 Hb_007441_360 0.1014527207 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
7 Hb_005074_010 0.107792152 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
8 Hb_028928_020 0.1079269845 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
9 Hb_000140_220 0.1108486084 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
10 Hb_002725_080 0.1113347276 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_003071_050 0.116236679 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
12 Hb_000434_060 0.1171934272 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
13 Hb_003581_050 0.1195926778 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
14 Hb_000427_040 0.1247932545 - - Gibberellin receptor GID1, putative [Ricinus communis]
15 Hb_000363_250 0.1250587221 - - PREDICTED: pirin-like protein [Malus domestica]
16 Hb_005051_010 0.1269282553 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
17 Hb_010174_200 0.1283576553 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
18 Hb_009771_040 0.1298309582 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
19 Hb_001242_040 0.130814581 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
20 Hb_000260_480 0.1311487189 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]

Gene co-expression network

sample Hb_001269_240 Hb_001269_240 Hb_007257_070 Hb_007257_070 Hb_001269_240--Hb_007257_070 Hb_000574_230 Hb_000574_230 Hb_001269_240--Hb_000574_230 Hb_026050_010 Hb_026050_010 Hb_001269_240--Hb_026050_010 Hb_009557_080 Hb_009557_080 Hb_001269_240--Hb_009557_080 Hb_007441_360 Hb_007441_360 Hb_001269_240--Hb_007441_360 Hb_005074_010 Hb_005074_010 Hb_001269_240--Hb_005074_010 Hb_007257_070--Hb_000574_230 Hb_007257_070--Hb_026050_010 Hb_007257_070--Hb_005074_010 Hb_028928_020 Hb_028928_020 Hb_007257_070--Hb_028928_020 Hb_003071_050 Hb_003071_050 Hb_007257_070--Hb_003071_050 Hb_000574_230--Hb_026050_010 Hb_002725_080 Hb_002725_080 Hb_000574_230--Hb_002725_080 Hb_024650_010 Hb_024650_010 Hb_000574_230--Hb_024650_010 Hb_007221_040 Hb_007221_040 Hb_000574_230--Hb_007221_040 Hb_009771_040 Hb_009771_040 Hb_026050_010--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_026050_010--Hb_002250_140 Hb_010174_200 Hb_010174_200 Hb_026050_010--Hb_010174_200 Hb_000258_230 Hb_000258_230 Hb_026050_010--Hb_000258_230 Hb_009557_080--Hb_002725_080 Hb_115114_010 Hb_115114_010 Hb_009557_080--Hb_115114_010 Hb_010417_110 Hb_010417_110 Hb_009557_080--Hb_010417_110 Hb_004879_030 Hb_004879_030 Hb_009557_080--Hb_004879_030 Hb_000140_220 Hb_000140_220 Hb_009557_080--Hb_000140_220 Hb_007441_360--Hb_010174_200 Hb_003581_050 Hb_003581_050 Hb_007441_360--Hb_003581_050 Hb_007441_360--Hb_000574_230 Hb_002097_130 Hb_002097_130 Hb_007441_360--Hb_002097_130 Hb_007441_360--Hb_007257_070 Hb_003562_040 Hb_003562_040 Hb_005074_010--Hb_003562_040 Hb_001913_030 Hb_001913_030 Hb_005074_010--Hb_001913_030 Hb_002335_010 Hb_002335_010 Hb_005074_010--Hb_002335_010 Hb_005074_010--Hb_028928_020 Hb_007007_090 Hb_007007_090 Hb_005074_010--Hb_007007_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168552 46.0278 28.4425 43.5047 0.253486 0.0340677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.18804 0.384597 0.220831 5.2678 37.7217

CAGE analysis