Hb_001269_270

Information

Type -
Description -
Location Contig1269: 295624-296064
Sequence    

Annotation

kegg
ID csv:101228988
description 60S ribosomal protein L27a-3-like
nr
ID ADR71245.1
description 60S ribosomal protein L27B [Hevea brasiliensis]
swissprot
ID P49637
description 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2
trembl
ID I3NMK8
description 60S ribosomal protein L27B OS=Hevea brasiliensis GN=RPL27B PE=2 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l27a-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08187: 295560-296287
cDNA
(Sanger)
(ID:Location)		 007_E19.ab1: 295557-296201 , 037_K05.ab1: 295560-296194 , 045_G24.ab1: 295560-296278

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_270 0.0 - - 60S ribosomal protein L27B [Hevea brasiliensis]
2 Hb_003125_150 0.048304005 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
3 Hb_001638_260 0.0580888138 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
4 Hb_000617_090 0.0636274688 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
5 Hb_001045_080 0.0665189538 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
6 Hb_000526_150 0.0679816057 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
7 Hb_009851_100 0.0723305403 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
8 Hb_001268_140 0.0735279785 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003226_210 0.0736474762 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
10 Hb_004724_160 0.0744248691 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
11 Hb_000970_010 0.0754511709 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
12 Hb_000312_090 0.0774174648 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
13 Hb_000099_060 0.0776761677 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
14 Hb_001818_020 0.0783102221 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
15 Hb_026398_010 0.0790743512 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
16 Hb_002835_320 0.0791002077 - - 60S ribosomal protein L27B [Hevea brasiliensis]
17 Hb_011311_010 0.0809707523 - - 60S ribosomal protein L27C [Hevea brasiliensis]
18 Hb_002660_030 0.0819434186 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008173_090 0.0838062055 - - glutathione peroxidase, putative [Ricinus communis]
20 Hb_000283_110 0.0849872379 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_270 Hb_001269_270 Hb_003125_150 Hb_003125_150 Hb_001269_270--Hb_003125_150 Hb_001638_260 Hb_001638_260 Hb_001269_270--Hb_001638_260 Hb_000617_090 Hb_000617_090 Hb_001269_270--Hb_000617_090 Hb_001045_080 Hb_001045_080 Hb_001269_270--Hb_001045_080 Hb_000526_150 Hb_000526_150 Hb_001269_270--Hb_000526_150 Hb_009851_100 Hb_009851_100 Hb_001269_270--Hb_009851_100 Hb_003125_150--Hb_001045_080 Hb_000312_090 Hb_000312_090 Hb_003125_150--Hb_000312_090 Hb_003125_150--Hb_009851_100 Hb_007479_020 Hb_007479_020 Hb_003125_150--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_003125_150--Hb_000120_750 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_001638_260--Hb_000526_150 Hb_000545_150 Hb_000545_150 Hb_001638_260--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_001638_260--Hb_001818_020 Hb_000617_090--Hb_000312_090 Hb_003226_210 Hb_003226_210 Hb_000617_090--Hb_003226_210 Hb_026398_010 Hb_026398_010 Hb_000617_090--Hb_026398_010 Hb_001221_310 Hb_001221_310 Hb_000617_090--Hb_001221_310 Hb_000617_090--Hb_003125_150 Hb_001045_080--Hb_009851_100 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_001045_080--Hb_000312_090 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_000526_150--Hb_009851_100 Hb_000526_150--Hb_000545_150 Hb_000634_050 Hb_000634_050 Hb_000526_150--Hb_000634_050 Hb_000526_150--Hb_001818_020 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_009851_100--Hb_000312_090 Hb_002835_320 Hb_002835_320 Hb_009851_100--Hb_002835_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
245.945 81.4951 82.5016 137.511 149.316 210.068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
431.382 687.862 231.377 141.062 47.3417

CAGE analysis