Hb_001269_310

Information

Type -
Description -
Location Contig1269: 320090-321261
Sequence    

Annotation

kegg
ID rcu:RCOM_0470900
description ccr4-associated factor, putative (EC:3.1.13.4)
nr
ID XP_012067515.1
description PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
swissprot
ID Q9SAI2
description Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1
trembl
ID A0A067L410
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27001 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable ccr4-associated factor 1 homolog 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08188: 319960-321386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_310 0.0 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
2 Hb_000997_150 0.1289199966 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_004223_110 0.1328424576 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
4 Hb_001051_090 0.1345976182 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
5 Hb_002400_230 0.1496984948 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
6 Hb_000175_630 0.1524135028 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
7 Hb_003026_030 0.1557490101 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
8 Hb_001454_220 0.1573030889 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
9 Hb_002896_060 0.1593204907 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
10 Hb_000136_030 0.1623446424 - - serine/arginine rich splicing factor, putative [Ricinus communis]
11 Hb_001277_360 0.1626327022 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
12 Hb_044155_010 0.1643321025 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
13 Hb_002805_060 0.1675070945 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
14 Hb_000505_110 0.1686420615 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
15 Hb_000264_180 0.1708013601 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
16 Hb_002942_090 0.1712889911 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
17 Hb_001301_130 0.1720525161 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
18 Hb_001021_160 0.1738469859 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
19 Hb_000599_170 0.1745975567 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
20 Hb_008921_010 0.1747097798 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_310 Hb_001269_310 Hb_000997_150 Hb_000997_150 Hb_001269_310--Hb_000997_150 Hb_004223_110 Hb_004223_110 Hb_001269_310--Hb_004223_110 Hb_001051_090 Hb_001051_090 Hb_001269_310--Hb_001051_090 Hb_002400_230 Hb_002400_230 Hb_001269_310--Hb_002400_230 Hb_000175_630 Hb_000175_630 Hb_001269_310--Hb_000175_630 Hb_003026_030 Hb_003026_030 Hb_001269_310--Hb_003026_030 Hb_000732_070 Hb_000732_070 Hb_000997_150--Hb_000732_070 Hb_001454_220 Hb_001454_220 Hb_000997_150--Hb_001454_220 Hb_000997_150--Hb_002400_230 Hb_044155_010 Hb_044155_010 Hb_000997_150--Hb_044155_010 Hb_000185_150 Hb_000185_150 Hb_000997_150--Hb_000185_150 Hb_007163_060 Hb_007163_060 Hb_004223_110--Hb_007163_060 Hb_000608_350 Hb_000608_350 Hb_004223_110--Hb_000608_350 Hb_008921_010 Hb_008921_010 Hb_004223_110--Hb_008921_010 Hb_172257_010 Hb_172257_010 Hb_004223_110--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_004223_110--Hb_000589_190 Hb_005322_050 Hb_005322_050 Hb_004223_110--Hb_005322_050 Hb_002896_060 Hb_002896_060 Hb_001051_090--Hb_002896_060 Hb_027380_030 Hb_027380_030 Hb_001051_090--Hb_027380_030 Hb_000599_170 Hb_000599_170 Hb_001051_090--Hb_000599_170 Hb_002805_060 Hb_002805_060 Hb_001051_090--Hb_002805_060 Hb_001051_090--Hb_004223_110 Hb_000453_140 Hb_000453_140 Hb_001051_090--Hb_000453_140 Hb_002400_230--Hb_000732_070 Hb_001454_170 Hb_001454_170 Hb_002400_230--Hb_001454_170 Hb_000334_130 Hb_000334_130 Hb_002400_230--Hb_000334_130 Hb_002400_230--Hb_001454_220 Hb_152540_010 Hb_152540_010 Hb_002400_230--Hb_152540_010 Hb_004032_230 Hb_004032_230 Hb_002400_230--Hb_004032_230 Hb_001427_210 Hb_001427_210 Hb_000175_630--Hb_001427_210 Hb_000041_300 Hb_000041_300 Hb_000175_630--Hb_000041_300 Hb_000264_180 Hb_000264_180 Hb_000175_630--Hb_000264_180 Hb_000334_170 Hb_000334_170 Hb_000175_630--Hb_000334_170 Hb_003470_070 Hb_003470_070 Hb_000175_630--Hb_003470_070 Hb_012262_040 Hb_012262_040 Hb_000175_630--Hb_012262_040 Hb_003026_030--Hb_000264_180 Hb_003026_030--Hb_044155_010 Hb_003026_030--Hb_002400_230 Hb_002291_060 Hb_002291_060 Hb_003026_030--Hb_002291_060 Hb_003026_030--Hb_000997_150 Hb_002450_140 Hb_002450_140 Hb_003026_030--Hb_002450_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.7273 107.777 130.431 102.353 188.367 54.78
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0202 23.5746 26.5934 13.6638 74.5205

CAGE analysis