Hb_001269_320

Information

Type -
Description -
Location Contig1269: 324148-325862
Sequence    

Annotation

kegg
ID cit:102613535
description 40S ribosomal protein S12-like
nr
ID ADR71311.1
description 40S ribosomal protein S12A [Hevea brasiliensis]
swissprot
ID Q9XHS0
description 40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1
trembl
ID I3NMS4
description 40S ribosomal protein S12 OS=Hevea brasiliensis GN=RPS12A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08192: 324190-326049
cDNA
(Sanger)
(ID:Location)		 006_J15.ab1: 324190-326049 , 033_I15.ab1: 324190-325990

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_320 0.0 - - 40S ribosomal protein S12A [Hevea brasiliensis]
2 Hb_003266_050 0.0812980933 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
3 Hb_007229_070 0.0870393341 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
4 Hb_004440_050 0.090571367 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
5 Hb_001369_660 0.0912211794 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
6 Hb_003011_040 0.0927470112 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
7 Hb_001279_070 0.0928827852 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
8 Hb_005389_150 0.0934253555 - - conserved hypothetical protein [Ricinus communis]
9 Hb_093666_020 0.0971778949 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
10 Hb_086703_010 0.0972486049 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
11 Hb_003874_020 0.0972651452 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
12 Hb_004502_020 0.1000068421 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
13 Hb_007432_080 0.1005618799 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
14 Hb_000771_100 0.1008431712 - - Os06g0527300 [Oryza sativa Japonica Group]
15 Hb_004724_100 0.1033006716 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
16 Hb_002272_260 0.1041616611 - - -
17 Hb_000505_140 0.1042633123 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
18 Hb_007441_270 0.1045988941 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
19 Hb_000840_190 0.1046040904 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
20 Hb_128048_010 0.1046601557 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]

Gene co-expression network

sample Hb_001269_320 Hb_001269_320 Hb_003266_050 Hb_003266_050 Hb_001269_320--Hb_003266_050 Hb_007229_070 Hb_007229_070 Hb_001269_320--Hb_007229_070 Hb_004440_050 Hb_004440_050 Hb_001269_320--Hb_004440_050 Hb_001369_660 Hb_001369_660 Hb_001269_320--Hb_001369_660 Hb_003011_040 Hb_003011_040 Hb_001269_320--Hb_003011_040 Hb_001279_070 Hb_001279_070 Hb_001269_320--Hb_001279_070 Hb_005389_150 Hb_005389_150 Hb_003266_050--Hb_005389_150 Hb_000815_040 Hb_000815_040 Hb_003266_050--Hb_000815_040 Hb_010691_060 Hb_010691_060 Hb_003266_050--Hb_010691_060 Hb_001278_110 Hb_001278_110 Hb_003266_050--Hb_001278_110 Hb_002890_140 Hb_002890_140 Hb_003266_050--Hb_002890_140 Hb_003058_130 Hb_003058_130 Hb_003266_050--Hb_003058_130 Hb_007229_070--Hb_001369_660 Hb_007229_070--Hb_004440_050 Hb_011828_050 Hb_011828_050 Hb_007229_070--Hb_011828_050 Hb_000157_030 Hb_000157_030 Hb_007229_070--Hb_000157_030 Hb_007229_070--Hb_003266_050 Hb_004440_050--Hb_001369_660 Hb_002411_170 Hb_002411_170 Hb_004440_050--Hb_002411_170 Hb_009767_120 Hb_009767_120 Hb_004440_050--Hb_009767_120 Hb_001604_080 Hb_001604_080 Hb_004440_050--Hb_001604_080 Hb_003874_020 Hb_003874_020 Hb_004440_050--Hb_003874_020 Hb_010180_020 Hb_010180_020 Hb_004440_050--Hb_010180_020 Hb_000163_160 Hb_000163_160 Hb_001369_660--Hb_000163_160 Hb_168054_010 Hb_168054_010 Hb_001369_660--Hb_168054_010 Hb_001369_660--Hb_010180_020 Hb_001369_660--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_001369_660--Hb_003687_110 Hb_004223_220 Hb_004223_220 Hb_003011_040--Hb_004223_220 Hb_000155_180 Hb_000155_180 Hb_003011_040--Hb_000155_180 Hb_093666_020 Hb_093666_020 Hb_003011_040--Hb_093666_020 Hb_010180_010 Hb_010180_010 Hb_003011_040--Hb_010180_010 Hb_003011_040--Hb_005389_150 Hb_001279_070--Hb_003874_020 Hb_032202_090 Hb_032202_090 Hb_001279_070--Hb_032202_090 Hb_001279_070--Hb_009767_120 Hb_000365_380 Hb_000365_380 Hb_001279_070--Hb_000365_380 Hb_002893_060 Hb_002893_060 Hb_001279_070--Hb_002893_060 Hb_007432_080 Hb_007432_080 Hb_001279_070--Hb_007432_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
188.253 63.2017 94.265 132.761 176.647 407.797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
314.511 428.642 117.822 156.486 40.3261

CAGE analysis