Hb_001269_370

Information

Type -
Description -
Location Contig1269: 380400-387086
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08980g
description POPTRDRAFT_566162; hypothetical protein
nr
ID XP_012067513.1
description PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
swissprot
ID Q9LM76
description U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1
trembl
ID A0A067L0I7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26999 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 43-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08198: 380426-380934 , PASA_asmbl_08199: 380504-380648 , PASA_asmbl_08200: 380748-381928 , PASA_asmbl_08201: 381463-381751 , PASA_asmbl_08202: 382048-385847 , PASA_asmbl_08203: 385906-387084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_370 0.0 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
2 Hb_002259_170 0.0744619272 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
3 Hb_000506_110 0.1070298119 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
4 Hb_001511_090 0.1110627022 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
5 Hb_000452_030 0.116868208 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
6 Hb_000920_130 0.1188986747 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001307_100 0.1196525146 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_000088_260 0.1214804885 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
9 Hb_000035_350 0.1217110319 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
10 Hb_022378_010 0.1241478575 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]
11 Hb_000340_040 0.124938685 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
12 Hb_000586_020 0.1286416185 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
13 Hb_068804_090 0.1306219724 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
14 Hb_001221_300 0.1314060002 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
15 Hb_001054_070 0.1316958723 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
16 Hb_000015_090 0.1323348575 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
17 Hb_001160_100 0.134181321 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
18 Hb_009288_010 0.1345003128 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_000979_140 0.1347111387 - - kinase family protein [Populus trichocarpa]
20 Hb_000673_010 0.1355168473 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_370 Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_001269_370--Hb_002259_170 Hb_000506_110 Hb_000506_110 Hb_001269_370--Hb_000506_110 Hb_001511_090 Hb_001511_090 Hb_001269_370--Hb_001511_090 Hb_000452_030 Hb_000452_030 Hb_001269_370--Hb_000452_030 Hb_000920_130 Hb_000920_130 Hb_001269_370--Hb_000920_130 Hb_001307_100 Hb_001307_100 Hb_001269_370--Hb_001307_100 Hb_009288_010 Hb_009288_010 Hb_002259_170--Hb_009288_010 Hb_002259_170--Hb_000452_030 Hb_002259_170--Hb_001511_090 Hb_002259_170--Hb_000506_110 Hb_000137_010 Hb_000137_010 Hb_002259_170--Hb_000137_010 Hb_003462_180 Hb_003462_180 Hb_000506_110--Hb_003462_180 Hb_000506_110--Hb_001511_090 Hb_000160_140 Hb_000160_140 Hb_000506_110--Hb_000160_140 Hb_008120_040 Hb_008120_040 Hb_000506_110--Hb_008120_040 Hb_000340_040 Hb_000340_040 Hb_001511_090--Hb_000340_040 Hb_000088_260 Hb_000088_260 Hb_001511_090--Hb_000088_260 Hb_001008_130 Hb_001008_130 Hb_001511_090--Hb_001008_130 Hb_000023_360 Hb_000023_360 Hb_001511_090--Hb_000023_360 Hb_000169_020 Hb_000169_020 Hb_001511_090--Hb_000169_020 Hb_000015_090 Hb_000015_090 Hb_000452_030--Hb_000015_090 Hb_003687_130 Hb_003687_130 Hb_000452_030--Hb_003687_130 Hb_000979_140 Hb_000979_140 Hb_000452_030--Hb_000979_140 Hb_000015_200 Hb_000015_200 Hb_000452_030--Hb_000015_200 Hb_111552_010 Hb_111552_010 Hb_000452_030--Hb_111552_010 Hb_000920_130--Hb_002259_170 Hb_000086_630 Hb_000086_630 Hb_000920_130--Hb_000086_630 Hb_000920_130--Hb_000506_110 Hb_000270_120 Hb_000270_120 Hb_000920_130--Hb_000270_120 Hb_001571_060 Hb_001571_060 Hb_000920_130--Hb_001571_060 Hb_002075_030 Hb_002075_030 Hb_001307_100--Hb_002075_030 Hb_000579_040 Hb_000579_040 Hb_001307_100--Hb_000579_040 Hb_068804_090 Hb_068804_090 Hb_001307_100--Hb_068804_090 Hb_001307_100--Hb_000088_260 Hb_032631_070 Hb_032631_070 Hb_001307_100--Hb_032631_070 Hb_138585_030 Hb_138585_030 Hb_001307_100--Hb_138585_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66993 9.48681 8.69439 5.04942 0.807734 1.96049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.11683 3.43391 4.57455 4.14339 12.0178

CAGE analysis