Hb_001269_400

Information

Type -
Description -
Location Contig1269: 412469-416248
Sequence    

Annotation

kegg
ID rcu:RCOM_0470860
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID ADU64758.1
description cinnamoyl-CoA reductase [Hevea brasiliensis]
swissprot
ID Q9S9N9
description Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID E9M776
description Cinnamoyl-CoA reductase OS=Hevea brasiliensis GN=CCR PE=2 SV=1
Gene Ontology
ID GO:0016621
description cinnamoyl- reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08210: 412589-416219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_400 0.0 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
2 Hb_149055_010 0.0701125315 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
3 Hb_002151_020 0.0761480251 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
4 Hb_002902_040 0.0834149103 - - PREDICTED: peroxidase 51 [Jatropha curcas]
5 Hb_000473_100 0.0839950475 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_007237_080 0.086099341 - - amino acid transporter, putative [Ricinus communis]
7 Hb_000342_020 0.0912656806 - - bel1 homeotic protein, putative [Ricinus communis]
8 Hb_000645_160 0.0987503324 - - protein translocase, putative [Ricinus communis]
9 Hb_001946_200 0.1083960774 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
10 Hb_007479_080 0.1089696014 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
11 Hb_000120_320 0.1110438317 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001138_070 0.1112968868 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
13 Hb_000162_070 0.1127907381 - - phospholipase C, putative [Ricinus communis]
14 Hb_002641_140 0.1132083079 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_026144_040 0.114257585 - - -
16 Hb_000098_260 0.1143022522 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
17 Hb_012787_060 0.1145257973 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
18 Hb_003454_050 0.1149648965 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
19 Hb_019496_040 0.1153730492 - - kinase family protein [Populus trichocarpa]
20 Hb_106089_010 0.1165638689 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]

Gene co-expression network

sample Hb_001269_400 Hb_001269_400 Hb_149055_010 Hb_149055_010 Hb_001269_400--Hb_149055_010 Hb_002151_020 Hb_002151_020 Hb_001269_400--Hb_002151_020 Hb_002902_040 Hb_002902_040 Hb_001269_400--Hb_002902_040 Hb_000473_100 Hb_000473_100 Hb_001269_400--Hb_000473_100 Hb_007237_080 Hb_007237_080 Hb_001269_400--Hb_007237_080 Hb_000342_020 Hb_000342_020 Hb_001269_400--Hb_000342_020 Hb_001138_070 Hb_001138_070 Hb_149055_010--Hb_001138_070 Hb_000329_010 Hb_000329_010 Hb_149055_010--Hb_000329_010 Hb_002809_080 Hb_002809_080 Hb_149055_010--Hb_002809_080 Hb_000645_160 Hb_000645_160 Hb_149055_010--Hb_000645_160 Hb_000120_320 Hb_000120_320 Hb_149055_010--Hb_000120_320 Hb_002151_020--Hb_002902_040 Hb_008598_010 Hb_008598_010 Hb_002151_020--Hb_008598_010 Hb_019496_040 Hb_019496_040 Hb_002151_020--Hb_019496_040 Hb_000045_080 Hb_000045_080 Hb_002151_020--Hb_000045_080 Hb_002151_020--Hb_000473_100 Hb_002902_040--Hb_019496_040 Hb_142026_010 Hb_142026_010 Hb_002902_040--Hb_142026_010 Hb_002205_150 Hb_002205_150 Hb_002902_040--Hb_002205_150 Hb_002902_040--Hb_000342_020 Hb_144703_010 Hb_144703_010 Hb_002902_040--Hb_144703_010 Hb_000868_130 Hb_000868_130 Hb_000473_100--Hb_000868_130 Hb_144449_010 Hb_144449_010 Hb_000473_100--Hb_144449_010 Hb_000473_100--Hb_002902_040 Hb_000069_540 Hb_000069_540 Hb_000473_100--Hb_000069_540 Hb_000856_200 Hb_000856_200 Hb_000473_100--Hb_000856_200 Hb_026144_040 Hb_026144_040 Hb_007237_080--Hb_026144_040 Hb_002370_050 Hb_002370_050 Hb_007237_080--Hb_002370_050 Hb_000162_070 Hb_000162_070 Hb_007237_080--Hb_000162_070 Hb_002811_110 Hb_002811_110 Hb_007237_080--Hb_002811_110 Hb_000571_060 Hb_000571_060 Hb_007237_080--Hb_000571_060 Hb_000613_250 Hb_000613_250 Hb_000342_020--Hb_000613_250 Hb_000472_020 Hb_000472_020 Hb_000342_020--Hb_000472_020 Hb_000342_020--Hb_144703_010 Hb_000342_020--Hb_019496_040 Hb_000342_020--Hb_002151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.754282 50.0919 66.5249 148.173 0.678921 0.215377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.190741 0 0.0469606 48.5577 71.5824

CAGE analysis