Hb_001269_470

Information

Type -
Description -
Location Contig1269: 512971-517147
Sequence    

Annotation

kegg
ID sly:101247118
description uncharacterized LOC101247118
nr
ID XP_012067499.1
description PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
swissprot
ID Q7VG78
description Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
trembl
ID A0A067L0H9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26989 PE=4 SV=1
Gene Ontology
ID GO:0008725
description glutamine amidotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08216: 513023-517097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_470 0.0 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
2 Hb_003181_060 0.0937209311 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
3 Hb_001711_120 0.1095201939 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
4 Hb_027298_010 0.1289567505 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009780_050 0.1426298623 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
6 Hb_001322_230 0.1429237398 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
7 Hb_001373_130 0.1440714109 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000594_100 0.1484542136 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
9 Hb_000392_550 0.1503744747 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002893_110 0.1582497467 transcription factor TF Family: DBP PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
11 Hb_005489_090 0.1608425801 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
12 Hb_008695_200 0.1609007545 - - Protein grpE, putative [Ricinus communis]
13 Hb_003462_180 0.1617704368 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
14 Hb_000560_040 0.1621059539 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
15 Hb_000152_480 0.1631826926 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
16 Hb_002053_010 0.1634982579 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
17 Hb_000983_070 0.164852434 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010577_040 0.1653784716 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
19 Hb_003602_060 0.1660432614 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
20 Hb_000510_030 0.166277546 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]

Gene co-expression network

sample Hb_001269_470 Hb_001269_470 Hb_003181_060 Hb_003181_060 Hb_001269_470--Hb_003181_060 Hb_001711_120 Hb_001711_120 Hb_001269_470--Hb_001711_120 Hb_027298_010 Hb_027298_010 Hb_001269_470--Hb_027298_010 Hb_009780_050 Hb_009780_050 Hb_001269_470--Hb_009780_050 Hb_001322_230 Hb_001322_230 Hb_001269_470--Hb_001322_230 Hb_001373_130 Hb_001373_130 Hb_001269_470--Hb_001373_130 Hb_027298_030 Hb_027298_030 Hb_003181_060--Hb_027298_030 Hb_021079_010 Hb_021079_010 Hb_003181_060--Hb_021079_010 Hb_003181_060--Hb_027298_010 Hb_003181_060--Hb_001711_120 Hb_000392_550 Hb_000392_550 Hb_003181_060--Hb_000392_550 Hb_000510_030 Hb_000510_030 Hb_001711_120--Hb_000510_030 Hb_002053_010 Hb_002053_010 Hb_001711_120--Hb_002053_010 Hb_001629_090 Hb_001629_090 Hb_001711_120--Hb_001629_090 Hb_000983_070 Hb_000983_070 Hb_001711_120--Hb_000983_070 Hb_001711_120--Hb_000392_550 Hb_001369_790 Hb_001369_790 Hb_001711_120--Hb_001369_790 Hb_019762_050 Hb_019762_050 Hb_027298_010--Hb_019762_050 Hb_027298_010--Hb_000392_550 Hb_000032_370 Hb_000032_370 Hb_027298_010--Hb_000032_370 Hb_065525_120 Hb_065525_120 Hb_027298_010--Hb_065525_120 Hb_140627_010 Hb_140627_010 Hb_027298_010--Hb_140627_010 Hb_027298_010--Hb_009780_050 Hb_000176_010 Hb_000176_010 Hb_009780_050--Hb_000176_010 Hb_009780_050--Hb_001711_120 Hb_000167_050 Hb_000167_050 Hb_009780_050--Hb_000167_050 Hb_009780_050--Hb_065525_120 Hb_009780_050--Hb_002053_010 Hb_001124_180 Hb_001124_180 Hb_009780_050--Hb_001124_180 Hb_000820_140 Hb_000820_140 Hb_001322_230--Hb_000820_140 Hb_001322_230--Hb_002053_010 Hb_001322_230--Hb_001711_120 Hb_003602_060 Hb_003602_060 Hb_001322_230--Hb_003602_060 Hb_000560_040 Hb_000560_040 Hb_001322_230--Hb_000560_040 Hb_001863_070 Hb_001863_070 Hb_001322_230--Hb_001863_070 Hb_000594_100 Hb_000594_100 Hb_001373_130--Hb_000594_100 Hb_001373_130--Hb_000983_070 Hb_010128_020 Hb_010128_020 Hb_001373_130--Hb_010128_020 Hb_002529_090 Hb_002529_090 Hb_001373_130--Hb_002529_090 Hb_005489_090 Hb_005489_090 Hb_001373_130--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001373_130--Hb_003935_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.84007 3.13828 10.4682 6.61185 0.71186 0.756556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19703 12.8539 3.20268 4.02256 14.6728

CAGE analysis