Hb_001269_480

Information

Type -
Description -
Location Contig1269: 517894-520496
Sequence    

Annotation

kegg
ID rcu:RCOM_1441560
description hypothetical protein
nr
ID XP_012067497.1
description PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9S9N6
description Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana GN=PNSB1 PE=2 SV=1
trembl
ID A0A067LBU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26988 PE=4 SV=1
Gene Ontology
ID GO:0009535
description photosynthetic ndh subunit of subcomplex b chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08217: 518023-520618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_480 0.0 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
2 Hb_001191_060 0.0499878369 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
3 Hb_002818_130 0.0513977039 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001310_020 0.0548766212 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
5 Hb_000221_130 0.0570413184 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
6 Hb_001348_160 0.058302996 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_086022_020 0.0589802873 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
8 Hb_000251_160 0.0601842187 - - chlorophyll A/B binding protein, putative [Ricinus communis]
9 Hb_002809_030 0.0633160256 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010697_020 0.0634778365 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008748_050 0.0642808586 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
12 Hb_000923_030 0.065973554 - - F-box family protein [Populus trichocarpa]
13 Hb_010812_030 0.0673146561 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000012_370 0.0695291487 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003090_050 0.0752256474 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
16 Hb_002374_480 0.0752353757 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_004129_170 0.0756006807 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
18 Hb_000320_370 0.0756339098 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
19 Hb_000111_460 0.0765940394 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
20 Hb_132840_050 0.0783386808 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001269_480 Hb_001269_480 Hb_001191_060 Hb_001191_060 Hb_001269_480--Hb_001191_060 Hb_002818_130 Hb_002818_130 Hb_001269_480--Hb_002818_130 Hb_001310_020 Hb_001310_020 Hb_001269_480--Hb_001310_020 Hb_000221_130 Hb_000221_130 Hb_001269_480--Hb_000221_130 Hb_001348_160 Hb_001348_160 Hb_001269_480--Hb_001348_160 Hb_086022_020 Hb_086022_020 Hb_001269_480--Hb_086022_020 Hb_001191_060--Hb_001310_020 Hb_001191_060--Hb_001348_160 Hb_000012_370 Hb_000012_370 Hb_001191_060--Hb_000012_370 Hb_001191_060--Hb_002818_130 Hb_003033_020 Hb_003033_020 Hb_001191_060--Hb_003033_020 Hb_002818_130--Hb_001310_020 Hb_011381_120 Hb_011381_120 Hb_002818_130--Hb_011381_120 Hb_002818_130--Hb_001348_160 Hb_002809_030 Hb_002809_030 Hb_002818_130--Hb_002809_030 Hb_001310_020--Hb_011381_120 Hb_001310_020--Hb_001348_160 Hb_001310_020--Hb_000221_130 Hb_007044_020 Hb_007044_020 Hb_000221_130--Hb_007044_020 Hb_008948_130 Hb_008948_130 Hb_000221_130--Hb_008948_130 Hb_010812_030 Hb_010812_030 Hb_000221_130--Hb_010812_030 Hb_000221_130--Hb_001191_060 Hb_010697_020 Hb_010697_020 Hb_001348_160--Hb_010697_020 Hb_001348_160--Hb_002809_030 Hb_031862_220 Hb_031862_220 Hb_001348_160--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001348_160--Hb_000373_210 Hb_000251_160 Hb_000251_160 Hb_086022_020--Hb_000251_160 Hb_004129_170 Hb_004129_170 Hb_086022_020--Hb_004129_170 Hb_008748_050 Hb_008748_050 Hb_086022_020--Hb_008748_050 Hb_002785_040 Hb_002785_040 Hb_086022_020--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_086022_020--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_086022_020--Hb_005375_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.946972 29.9746 15.1202 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.227146 0.255283 0.0479002 0.316034 93.4357

CAGE analysis