Hb_001269_510

Information

Type -
Description -
Location Contig1269: 533802-538670
Sequence    

Annotation

kegg
ID rcu:RCOM_1441620
description Cyclic nucleotide-gated ion channel, putative (EC:2.7.11.12)
nr
ID XP_002512726.1
description Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
swissprot
ID Q9FXH6
description Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2
trembl
ID B9RGL7
description Cyclic nucleotide-gated ion channel, putative OS=Ricinus communis GN=RCOM_1441620 PE=4 SV=1
Gene Ontology
ID GO:0004692
description cyclic nucleotide-gated ion channel 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_510 0.0 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
2 Hb_002450_140 0.1567742389 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
3 Hb_000424_070 0.1728298853 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
4 Hb_001776_200 0.1794960263 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
5 Hb_000058_050 0.1826281397 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
6 Hb_000313_290 0.1854458217 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_003026_030 0.1907329997 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
8 Hb_027472_130 0.1908865802 - - Cytochrome P450 [Theobroma cacao]
9 Hb_000123_140 0.1911970465 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
10 Hb_011609_010 0.1914605236 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
11 Hb_000317_190 0.1922045662 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
12 Hb_014497_030 0.1929467031 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
13 Hb_006935_040 0.1939329941 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
14 Hb_008725_140 0.1948044031 - - PREDICTED: kynurenine--oxoglutarate transaminase-like isoform X1 [Jatropha curcas]
15 Hb_001196_080 0.1972457282 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
16 Hb_001414_050 0.1979561781 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
17 Hb_069841_010 0.1988288947 - - resistance protein [Quercus suber]
18 Hb_005194_040 0.2002617013 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_000318_240 0.2010516096 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003090_150 0.201308026 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_510 Hb_001269_510 Hb_002450_140 Hb_002450_140 Hb_001269_510--Hb_002450_140 Hb_000424_070 Hb_000424_070 Hb_001269_510--Hb_000424_070 Hb_001776_200 Hb_001776_200 Hb_001269_510--Hb_001776_200 Hb_000058_050 Hb_000058_050 Hb_001269_510--Hb_000058_050 Hb_000313_290 Hb_000313_290 Hb_001269_510--Hb_000313_290 Hb_003026_030 Hb_003026_030 Hb_001269_510--Hb_003026_030 Hb_002450_140--Hb_003026_030 Hb_000997_150 Hb_000997_150 Hb_002450_140--Hb_000997_150 Hb_044155_010 Hb_044155_010 Hb_002450_140--Hb_044155_010 Hb_023001_070 Hb_023001_070 Hb_002450_140--Hb_023001_070 Hb_001300_100 Hb_001300_100 Hb_002450_140--Hb_001300_100 Hb_000300_710 Hb_000300_710 Hb_000424_070--Hb_000300_710 Hb_029622_030 Hb_029622_030 Hb_000424_070--Hb_029622_030 Hb_000010_130 Hb_000010_130 Hb_000424_070--Hb_000010_130 Hb_000211_040 Hb_000211_040 Hb_000424_070--Hb_000211_040 Hb_002960_110 Hb_002960_110 Hb_000424_070--Hb_002960_110 Hb_005194_040 Hb_005194_040 Hb_000424_070--Hb_005194_040 Hb_011671_110 Hb_011671_110 Hb_001776_200--Hb_011671_110 Hb_001414_050 Hb_001414_050 Hb_001776_200--Hb_001414_050 Hb_047442_010 Hb_047442_010 Hb_001776_200--Hb_047442_010 Hb_005394_010 Hb_005394_010 Hb_001776_200--Hb_005394_010 Hb_002609_190 Hb_002609_190 Hb_001776_200--Hb_002609_190 Hb_001894_160 Hb_001894_160 Hb_001776_200--Hb_001894_160 Hb_000058_050--Hb_002609_190 Hb_010368_080 Hb_010368_080 Hb_000058_050--Hb_010368_080 Hb_012305_140 Hb_012305_140 Hb_000058_050--Hb_012305_140 Hb_000076_100 Hb_000076_100 Hb_000058_050--Hb_000076_100 Hb_005568_090 Hb_005568_090 Hb_000058_050--Hb_005568_090 Hb_001196_080 Hb_001196_080 Hb_000058_050--Hb_001196_080 Hb_000418_090 Hb_000418_090 Hb_000313_290--Hb_000418_090 Hb_001624_040 Hb_001624_040 Hb_000313_290--Hb_001624_040 Hb_000331_340 Hb_000331_340 Hb_000313_290--Hb_000331_340 Hb_003683_030 Hb_003683_030 Hb_000313_290--Hb_003683_030 Hb_001250_040 Hb_001250_040 Hb_000313_290--Hb_001250_040 Hb_000313_290--Hb_000010_130 Hb_000264_180 Hb_000264_180 Hb_003026_030--Hb_000264_180 Hb_003026_030--Hb_044155_010 Hb_002400_230 Hb_002400_230 Hb_003026_030--Hb_002400_230 Hb_002291_060 Hb_002291_060 Hb_003026_030--Hb_002291_060 Hb_003026_030--Hb_000997_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125346 0.531177 0.989976 0.137137 0.397658 0.119792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0773583 0.0608707 0 0.0665152 0.193699

CAGE analysis