Hb_001269_530

Information

Type -
Description -
Location Contig1269: 564418-590513
Sequence    

Annotation

kegg
ID rcu:RCOM_1441940
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002512728.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID B9RGL9
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_1441940 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08225: 568365-569579 , PASA_asmbl_08226: 576192-576379 , PASA_asmbl_08227: 576536-577168 , PASA_asmbl_08228: 581659-583522 , PASA_asmbl_08229: 583918-584315 , PASA_asmbl_08230: 584645-585188 , PASA_asmbl_08231: 585583-588609 , PASA_asmbl_08233: 590404-590883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_530 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_001913_030 0.0696730343 - - ankyrin repeat protein [Bruguiera gymnorhiza]
3 Hb_000537_090 0.0869022433 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002335_010 0.0900435209 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
5 Hb_000732_100 0.0965982443 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
6 Hb_000589_330 0.0989019852 - - kinase, putative [Ricinus communis]
7 Hb_173107_020 0.1013578505 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
8 Hb_005074_010 0.1073491071 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
9 Hb_002250_140 0.1077248314 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
10 Hb_001013_050 0.1080878372 - - unnamed protein product [Coffea canephora]
11 Hb_001013_080 0.1105927904 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
12 Hb_003835_030 0.1122695898 - - glycosyltransferase, partial [Arabidopsis thaliana]
13 Hb_001318_230 0.1135515066 - - Boron transporter, putative [Ricinus communis]
14 Hb_007007_090 0.1138687069 - - phospholipase d beta, putative [Ricinus communis]
15 Hb_000365_190 0.1159608405 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
16 Hb_000270_750 0.1161526734 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
17 Hb_000041_160 0.1230714344 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
18 Hb_114733_010 0.1242150877 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
19 Hb_000816_050 0.125849057 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_007292_050 0.1277445181 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_530 Hb_001269_530 Hb_001913_030 Hb_001913_030 Hb_001269_530--Hb_001913_030 Hb_000537_090 Hb_000537_090 Hb_001269_530--Hb_000537_090 Hb_002335_010 Hb_002335_010 Hb_001269_530--Hb_002335_010 Hb_000732_100 Hb_000732_100 Hb_001269_530--Hb_000732_100 Hb_000589_330 Hb_000589_330 Hb_001269_530--Hb_000589_330 Hb_173107_020 Hb_173107_020 Hb_001269_530--Hb_173107_020 Hb_001913_030--Hb_000537_090 Hb_001013_080 Hb_001013_080 Hb_001913_030--Hb_001013_080 Hb_005074_010 Hb_005074_010 Hb_001913_030--Hb_005074_010 Hb_001913_030--Hb_002335_010 Hb_001913_030--Hb_000589_330 Hb_000537_090--Hb_000732_100 Hb_002598_020 Hb_002598_020 Hb_000537_090--Hb_002598_020 Hb_001318_230 Hb_001318_230 Hb_000537_090--Hb_001318_230 Hb_000537_090--Hb_001013_080 Hb_000956_100 Hb_000956_100 Hb_002335_010--Hb_000956_100 Hb_027892_050 Hb_027892_050 Hb_002335_010--Hb_027892_050 Hb_000041_160 Hb_000041_160 Hb_002335_010--Hb_000041_160 Hb_002335_010--Hb_005074_010 Hb_000732_100--Hb_001318_230 Hb_114733_010 Hb_114733_010 Hb_000732_100--Hb_114733_010 Hb_000090_020 Hb_000090_020 Hb_000732_100--Hb_000090_020 Hb_000732_100--Hb_173107_020 Hb_001013_050 Hb_001013_050 Hb_000589_330--Hb_001013_050 Hb_007007_090 Hb_007007_090 Hb_000589_330--Hb_007007_090 Hb_003835_030 Hb_003835_030 Hb_000589_330--Hb_003835_030 Hb_002097_130 Hb_002097_130 Hb_000589_330--Hb_002097_130 Hb_000384_020 Hb_000384_020 Hb_173107_020--Hb_000384_020 Hb_173107_020--Hb_114733_010 Hb_002250_140 Hb_002250_140 Hb_173107_020--Hb_002250_140 Hb_000991_080 Hb_000991_080 Hb_173107_020--Hb_000991_080 Hb_009771_040 Hb_009771_040 Hb_173107_020--Hb_009771_040 Hb_000045_080 Hb_000045_080 Hb_173107_020--Hb_000045_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0417648 9.75641 2.49901 9.18836 0.0355616 0.0713248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00436534 0.00687143 0.00664548 1.70091 4.61513

CAGE analysis