Hb_001269_570

Information

Type -
Description -
Location Contig1269: 600543-601019
Sequence    

Annotation

kegg
ID pop:POPTR_0001s03430g
description hypothetical protein
nr
ID XP_006368491.1
description hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GNG0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03430g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08235: 600510-601029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_570 0.0 - - hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
2 Hb_108216_030 0.1863035778 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
3 Hb_000521_070 0.1892063732 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
4 Hb_000365_040 0.22309394 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
5 Hb_000035_510 0.2236846711 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
6 Hb_000893_010 0.2293105066 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
7 Hb_001454_080 0.2297787528 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
8 Hb_004705_090 0.2298093227 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003647_110 0.2342494563 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
10 Hb_000270_790 0.2388337785 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
11 Hb_004925_030 0.2396676305 - - EXORDIUM like 1 [Theobroma cacao]
12 Hb_006052_080 0.2425975995 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
13 Hb_009411_030 0.2429455232 - - PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]
14 Hb_000959_180 0.2439969681 - - hypothetical protein JCGZ_09448 [Jatropha curcas]
15 Hb_011120_030 0.2441513197 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
16 Hb_000302_110 0.2446729771 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_156850_040 0.249125352 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
18 Hb_002030_190 0.2516741247 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000206_270 0.2523901202 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
20 Hb_001247_080 0.2545955971 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001269_570 Hb_001269_570 Hb_108216_030 Hb_108216_030 Hb_001269_570--Hb_108216_030 Hb_000521_070 Hb_000521_070 Hb_001269_570--Hb_000521_070 Hb_000365_040 Hb_000365_040 Hb_001269_570--Hb_000365_040 Hb_000035_510 Hb_000035_510 Hb_001269_570--Hb_000035_510 Hb_000893_010 Hb_000893_010 Hb_001269_570--Hb_000893_010 Hb_001454_080 Hb_001454_080 Hb_001269_570--Hb_001454_080 Hb_108216_030--Hb_000365_040 Hb_003952_080 Hb_003952_080 Hb_108216_030--Hb_003952_080 Hb_156850_040 Hb_156850_040 Hb_108216_030--Hb_156850_040 Hb_009851_040 Hb_009851_040 Hb_108216_030--Hb_009851_040 Hb_001247_080 Hb_001247_080 Hb_108216_030--Hb_001247_080 Hb_004925_030 Hb_004925_030 Hb_000521_070--Hb_004925_030 Hb_000302_110 Hb_000302_110 Hb_000521_070--Hb_000302_110 Hb_007741_090 Hb_007741_090 Hb_000521_070--Hb_007741_090 Hb_007575_090 Hb_007575_090 Hb_000521_070--Hb_007575_090 Hb_002030_190 Hb_002030_190 Hb_000521_070--Hb_002030_190 Hb_000206_270 Hb_000206_270 Hb_000521_070--Hb_000206_270 Hb_005396_030 Hb_005396_030 Hb_000365_040--Hb_005396_030 Hb_000733_090 Hb_000733_090 Hb_000365_040--Hb_000733_090 Hb_000365_040--Hb_001247_080 Hb_000860_030 Hb_000860_030 Hb_000365_040--Hb_000860_030 Hb_111985_090 Hb_111985_090 Hb_000365_040--Hb_111985_090 Hb_006052_080 Hb_006052_080 Hb_000035_510--Hb_006052_080 Hb_001053_100 Hb_001053_100 Hb_000035_510--Hb_001053_100 Hb_103931_010 Hb_103931_010 Hb_000035_510--Hb_103931_010 Hb_005463_120 Hb_005463_120 Hb_000035_510--Hb_005463_120 Hb_000027_010 Hb_000027_010 Hb_000035_510--Hb_000027_010 Hb_000628_100 Hb_000628_100 Hb_000035_510--Hb_000628_100 Hb_004705_090 Hb_004705_090 Hb_000893_010--Hb_004705_090 Hb_004531_180 Hb_004531_180 Hb_000893_010--Hb_004531_180 Hb_104169_010 Hb_104169_010 Hb_000893_010--Hb_104169_010 Hb_072290_010 Hb_072290_010 Hb_000893_010--Hb_072290_010 Hb_006816_110 Hb_006816_110 Hb_000893_010--Hb_006816_110 Hb_000893_010--Hb_000521_070 Hb_009249_020 Hb_009249_020 Hb_001454_080--Hb_009249_020 Hb_000094_190 Hb_000094_190 Hb_001454_080--Hb_000094_190 Hb_000844_030 Hb_000844_030 Hb_001454_080--Hb_000844_030 Hb_003647_110 Hb_003647_110 Hb_001454_080--Hb_003647_110 Hb_185506_010 Hb_185506_010 Hb_001454_080--Hb_185506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105017 1.74321 0.806696 13.5814 2.28236 0.220119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.241761 0.12804 0.265649

CAGE analysis