Hb_001269_610

Information

Type -
Description -
Location Contig1269: 638564-640448
Sequence    

Annotation

kegg
ID rcu:RCOM_1442130
description Chaperone protein dnaJ 8, chloroplast precursor, putative
nr
ID XP_002512737.1
description Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SAG8
description Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1
trembl
ID B9RGM8
description Chaperone protein dnaJ 8, chloroplast, putative OS=Ricinus communis GN=RCOM_1442130 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chaperone protein dnaj chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08246: 638740-640500 , PASA_asmbl_08247: 639299-639441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_610 0.0 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
2 Hb_005391_040 0.0884103657 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
3 Hb_150651_040 0.0966417284 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
4 Hb_012506_050 0.1026848554 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1 [Jatropha curcas]
5 Hb_062226_140 0.1070735693 - - PREDICTED: protein NEDD1 [Jatropha curcas]
6 Hb_004724_270 0.1146916878 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
7 Hb_005245_080 0.1157133447 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
8 Hb_001416_010 0.1217297265 - - Thioredoxin H-type, putative [Ricinus communis]
9 Hb_000362_190 0.1232911634 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
10 Hb_002301_150 0.1239901102 - - Drought-responsive family protein [Theobroma cacao]
11 Hb_000529_030 0.1241012479 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_008013_050 0.1246700843 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
13 Hb_002601_110 0.1247187684 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
14 Hb_006153_110 0.1274200761 - - dimethylaniline monooxygenase, putative [Ricinus communis]
15 Hb_089995_010 0.1275229164 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
16 Hb_010128_100 0.127650015 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
17 Hb_023371_020 0.128778263 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
18 Hb_003848_040 0.1288756694 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
19 Hb_004734_040 0.1294853256 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
20 Hb_000457_180 0.130925002 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001269_610 Hb_001269_610 Hb_005391_040 Hb_005391_040 Hb_001269_610--Hb_005391_040 Hb_150651_040 Hb_150651_040 Hb_001269_610--Hb_150651_040 Hb_012506_050 Hb_012506_050 Hb_001269_610--Hb_012506_050 Hb_062226_140 Hb_062226_140 Hb_001269_610--Hb_062226_140 Hb_004724_270 Hb_004724_270 Hb_001269_610--Hb_004724_270 Hb_005245_080 Hb_005245_080 Hb_001269_610--Hb_005245_080 Hb_005391_040--Hb_150651_040 Hb_004734_040 Hb_004734_040 Hb_005391_040--Hb_004734_040 Hb_089995_010 Hb_089995_010 Hb_005391_040--Hb_089995_010 Hb_007894_060 Hb_007894_060 Hb_005391_040--Hb_007894_060 Hb_007928_030 Hb_007928_030 Hb_005391_040--Hb_007928_030 Hb_000465_390 Hb_000465_390 Hb_005391_040--Hb_000465_390 Hb_150651_040--Hb_005245_080 Hb_000529_030 Hb_000529_030 Hb_150651_040--Hb_000529_030 Hb_000457_180 Hb_000457_180 Hb_150651_040--Hb_000457_180 Hb_001279_080 Hb_001279_080 Hb_150651_040--Hb_001279_080 Hb_150651_040--Hb_000465_390 Hb_021596_030 Hb_021596_030 Hb_012506_050--Hb_021596_030 Hb_002217_510 Hb_002217_510 Hb_012506_050--Hb_002217_510 Hb_000462_170 Hb_000462_170 Hb_012506_050--Hb_000462_170 Hb_003376_330 Hb_003376_330 Hb_012506_050--Hb_003376_330 Hb_000130_410 Hb_000130_410 Hb_012506_050--Hb_000130_410 Hb_000342_100 Hb_000342_100 Hb_062226_140--Hb_000342_100 Hb_000207_400 Hb_000207_400 Hb_062226_140--Hb_000207_400 Hb_000331_470 Hb_000331_470 Hb_062226_140--Hb_000331_470 Hb_062226_140--Hb_005391_040 Hb_062226_140--Hb_000465_390 Hb_000111_380 Hb_000111_380 Hb_062226_140--Hb_000111_380 Hb_005211_180 Hb_005211_180 Hb_004724_270--Hb_005211_180 Hb_008013_050 Hb_008013_050 Hb_004724_270--Hb_008013_050 Hb_010368_010 Hb_010368_010 Hb_004724_270--Hb_010368_010 Hb_004724_270--Hb_005245_080 Hb_092462_020 Hb_092462_020 Hb_004724_270--Hb_092462_020 Hb_003124_150 Hb_003124_150 Hb_004724_270--Hb_003124_150 Hb_005245_080--Hb_089995_010 Hb_005245_080--Hb_005391_040 Hb_005245_080--Hb_008013_050 Hb_000030_290 Hb_000030_290 Hb_005245_080--Hb_000030_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.62175 7.48151 11.2819 13.848 7.92476 5.96977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3085 15.4033 4.93124 8.90755 9.69509

CAGE analysis