Hb_001269_630

Information

Type -
Description -
Location Contig1269: 661216-663524
Sequence    

Annotation

kegg
ID tcc:TCM_027469
description GAG1At protein
nr
ID XP_012067483.1
description PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A068TSD1
description Coffea canephora DH200=94 genomic scaffold, scaffold_2 OS=Coffea canephora GN=GSCOC_T00022264001 PE=4 SV=1
Gene Ontology
ID GO:0016021
description gag1at protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08249: 661268-663534 , PASA_asmbl_08250: 661381-663545
cDNA
(Sanger)
(ID:Location)		 008_F11r.ab1: 663745-667460

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_630 0.0 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
2 Hb_002110_120 0.055512458 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
3 Hb_001832_060 0.0733717001 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
4 Hb_007317_150 0.0765570218 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
5 Hb_003656_070 0.0782306106 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
6 Hb_000020_060 0.0833092513 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
7 Hb_002686_020 0.0837749774 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
8 Hb_000698_030 0.0840663945 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
9 Hb_001047_230 0.0849064806 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_000608_370 0.0866616882 - - acyl-carrier-protein [Triadica sebifera]
11 Hb_007416_030 0.0866625097 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
12 Hb_000788_090 0.0870611705 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
13 Hb_001235_190 0.0877406241 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
14 Hb_008173_090 0.0881329451 - - glutathione peroxidase, putative [Ricinus communis]
15 Hb_001159_140 0.0881359893 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
16 Hb_015279_010 0.0883464834 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
17 Hb_000200_100 0.0900594157 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
18 Hb_003126_080 0.0910644834 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
19 Hb_006031_020 0.0914236966 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
20 Hb_004116_190 0.0921417515 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_630 Hb_001269_630 Hb_002110_120 Hb_002110_120 Hb_001269_630--Hb_002110_120 Hb_001832_060 Hb_001832_060 Hb_001269_630--Hb_001832_060 Hb_007317_150 Hb_007317_150 Hb_001269_630--Hb_007317_150 Hb_003656_070 Hb_003656_070 Hb_001269_630--Hb_003656_070 Hb_000020_060 Hb_000020_060 Hb_001269_630--Hb_000020_060 Hb_002686_020 Hb_002686_020 Hb_001269_630--Hb_002686_020 Hb_002110_120--Hb_007317_150 Hb_002110_120--Hb_000020_060 Hb_001235_190 Hb_001235_190 Hb_002110_120--Hb_001235_190 Hb_002110_120--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_002110_120--Hb_008173_090 Hb_004453_170 Hb_004453_170 Hb_001832_060--Hb_004453_170 Hb_000698_030 Hb_000698_030 Hb_001832_060--Hb_000698_030 Hb_000127_180 Hb_000127_180 Hb_001832_060--Hb_000127_180 Hb_004116_190 Hb_004116_190 Hb_001832_060--Hb_004116_190 Hb_001047_230 Hb_001047_230 Hb_001832_060--Hb_001047_230 Hb_007317_150--Hb_001235_190 Hb_000630_060 Hb_000630_060 Hb_007317_150--Hb_000630_060 Hb_007317_150--Hb_000020_060 Hb_000926_300 Hb_000926_300 Hb_007317_150--Hb_000926_300 Hb_003656_070--Hb_008173_090 Hb_003656_070--Hb_001047_230 Hb_000574_480 Hb_000574_480 Hb_003656_070--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_002995_020 Hb_002995_020 Hb_000020_060--Hb_002995_020 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_003787_010 Hb_003787_010 Hb_000020_060--Hb_003787_010 Hb_003050_080 Hb_003050_080 Hb_002686_020--Hb_003050_080 Hb_008878_030 Hb_008878_030 Hb_002686_020--Hb_008878_030 Hb_001540_010 Hb_001540_010 Hb_002686_020--Hb_001540_010 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.5323 21.0269 20.735 19.8442 42.7239 23.5664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.7603 79.4236 39.0654 23.4644 11.3246

CAGE analysis