Hb_001269_680

Information

Type -
Description -
Location Contig1269: 680671-683108
Sequence    

Annotation

kegg
ID rcu:RCOM_1442480
description hypothetical protein
nr
ID XP_011034587.1
description PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9RGP3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442480 PE=4 SV=1
Gene Ontology
ID GO:0016301
description snf1-related kinase interactor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08258: 680660-683016
cDNA
(Sanger)
(ID:Location)		 042_P19.ab1: 681049-682970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_680 0.0 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
2 Hb_007778_030 0.0495149281 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_005539_350 0.0512792664 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002007_060 0.0641783609 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
5 Hb_003001_120 0.0664702816 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
6 Hb_001662_070 0.0687886785 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
7 Hb_000230_200 0.0688525156 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
8 Hb_000840_030 0.0708619297 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
9 Hb_002968_060 0.0726533386 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
10 Hb_165132_010 0.0760006063 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
11 Hb_004324_310 0.0761121227 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011689_080 0.0786410132 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
13 Hb_002188_130 0.0795217358 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
14 Hb_003687_110 0.0795440496 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
15 Hb_145880_030 0.080610758 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
16 Hb_004657_050 0.0821817703 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
17 Hb_003929_160 0.0840724933 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
18 Hb_000054_100 0.0843958426 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
19 Hb_001936_080 0.0845221588 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
20 Hb_000103_560 0.084972684 - - ADP-ribosylation factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001269_680 Hb_001269_680 Hb_007778_030 Hb_007778_030 Hb_001269_680--Hb_007778_030 Hb_005539_350 Hb_005539_350 Hb_001269_680--Hb_005539_350 Hb_002007_060 Hb_002007_060 Hb_001269_680--Hb_002007_060 Hb_003001_120 Hb_003001_120 Hb_001269_680--Hb_003001_120 Hb_001662_070 Hb_001662_070 Hb_001269_680--Hb_001662_070 Hb_000230_200 Hb_000230_200 Hb_001269_680--Hb_000230_200 Hb_145880_030 Hb_145880_030 Hb_007778_030--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_007778_030--Hb_010407_040 Hb_165132_010 Hb_165132_010 Hb_007778_030--Hb_165132_010 Hb_000163_160 Hb_000163_160 Hb_007778_030--Hb_000163_160 Hb_000160_130 Hb_000160_130 Hb_007778_030--Hb_000160_130 Hb_006541_030 Hb_006541_030 Hb_005539_350--Hb_006541_030 Hb_007380_070 Hb_007380_070 Hb_005539_350--Hb_007380_070 Hb_002874_190 Hb_002874_190 Hb_005539_350--Hb_002874_190 Hb_005539_350--Hb_002007_060 Hb_000840_030 Hb_000840_030 Hb_005539_350--Hb_000840_030 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_003929_160 Hb_003929_160 Hb_003001_120--Hb_003929_160 Hb_011689_080 Hb_011689_080 Hb_003001_120--Hb_011689_080 Hb_001936_080 Hb_001936_080 Hb_003001_120--Hb_001936_080 Hb_118707_030 Hb_118707_030 Hb_003001_120--Hb_118707_030 Hb_003001_120--Hb_000230_200 Hb_025645_010 Hb_025645_010 Hb_001662_070--Hb_025645_010 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001662_070--Hb_000787_050 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_002968_060 Hb_002968_060 Hb_000230_200--Hb_002968_060 Hb_000230_200--Hb_001301_160 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.3822 11.9246 16.6819 15.1644 19.5285 28.8184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3981 33.9363 27.4337 7.39181 9.33725

CAGE analysis