Hb_001271_040

Information

Type -
Description -
Location Contig1271: 61515-63459
Sequence    

Annotation

kegg
ID pop:POPTR_0019s039903
description hypothetical protein
nr
ID XP_006371108.1
description hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
swissprot
ID B9S1N2
description Probable terpene synthase 8 OS=Ricinus communis GN=TPS8 PE=3 SV=1
trembl
ID U5FEJ7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s039903g PE=4 SV=1
Gene Ontology
ID GO:0016829
description probable terpene synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001271_040 0.0 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
2 Hb_101778_020 0.0413623877 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
3 Hb_006586_020 0.0416345541 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
4 Hb_011924_010 0.0418514332 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
5 Hb_000123_320 0.0430981453 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
6 Hb_003430_010 0.0435438879 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
7 Hb_068447_010 0.045553496 - - protein with unknown function [Ricinus communis]
8 Hb_003392_020 0.046020928 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
9 Hb_006011_060 0.0463244859 - - -
10 Hb_007676_070 0.0472227528 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
11 Hb_000764_060 0.0479468884 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
12 Hb_000756_040 0.0501299177 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
13 Hb_008248_010 0.0503402217 - - -
14 Hb_008078_040 0.0509138734 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
15 Hb_005204_030 0.053462572 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
16 Hb_185340_020 0.0551660626 - - -
17 Hb_007259_030 0.0553533816 - - -
18 Hb_083270_010 0.0597291602 - - hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]
19 Hb_001104_260 0.0603311325 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
20 Hb_001403_100 0.0606577555 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_001271_040 Hb_001271_040 Hb_101778_020 Hb_101778_020 Hb_001271_040--Hb_101778_020 Hb_006586_020 Hb_006586_020 Hb_001271_040--Hb_006586_020 Hb_011924_010 Hb_011924_010 Hb_001271_040--Hb_011924_010 Hb_000123_320 Hb_000123_320 Hb_001271_040--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_001271_040--Hb_003430_010 Hb_068447_010 Hb_068447_010 Hb_001271_040--Hb_068447_010 Hb_101778_020--Hb_006586_020 Hb_101778_020--Hb_011924_010 Hb_101778_020--Hb_000123_320 Hb_101778_020--Hb_003430_010 Hb_101778_020--Hb_068447_010 Hb_003392_020 Hb_003392_020 Hb_101778_020--Hb_003392_020 Hb_006586_020--Hb_000123_320 Hb_006586_020--Hb_003430_010 Hb_006586_020--Hb_011924_010 Hb_006586_020--Hb_003392_020 Hb_006011_060 Hb_006011_060 Hb_006586_020--Hb_006011_060 Hb_011924_010--Hb_068447_010 Hb_007676_070 Hb_007676_070 Hb_011924_010--Hb_007676_070 Hb_000764_060 Hb_000764_060 Hb_011924_010--Hb_000764_060 Hb_011924_010--Hb_000123_320 Hb_000123_320--Hb_003430_010 Hb_000123_320--Hb_003392_020 Hb_000123_320--Hb_006011_060 Hb_008248_010 Hb_008248_010 Hb_000123_320--Hb_008248_010 Hb_003430_010--Hb_003392_020 Hb_003430_010--Hb_006011_060 Hb_003430_010--Hb_008248_010 Hb_068447_010--Hb_007676_070 Hb_068447_010--Hb_000764_060 Hb_000756_040 Hb_000756_040 Hb_068447_010--Hb_000756_040 Hb_008078_040 Hb_008078_040 Hb_068447_010--Hb_008078_040 Hb_005204_030 Hb_005204_030 Hb_068447_010--Hb_005204_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0372815 33.9803 0.0299942 0.0717824 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.57665 0

CAGE analysis