Hb_001274_030

Information

Type -
Description -
Location Contig1274: 23800-26676
Sequence    

Annotation

kegg
ID cic:CICLE_v10002842mg
description hypothetical protein
nr
ID XP_012064726.1
description PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LIC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05456 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal l18p l5e family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08358: 22358-22872 , PASA_asmbl_08361: 23979-27016 , PASA_asmbl_08362: 24282-24702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001274_030 0.0 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
2 Hb_001913_010 0.0816556797 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
3 Hb_001823_100 0.0839293521 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
4 Hb_000162_090 0.09793711 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
5 Hb_000803_150 0.0996272909 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
6 Hb_007951_050 0.1044432135 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000787_110 0.1056840894 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
8 Hb_000749_150 0.1058973575 - - -
9 Hb_000175_450 0.1061683799 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
10 Hb_001488_330 0.1067219394 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
11 Hb_029584_130 0.1086802193 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
12 Hb_001609_030 0.1089545647 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
13 Hb_000188_100 0.110348169 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
14 Hb_012340_030 0.1116593988 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
15 Hb_000165_030 0.111895997 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
16 Hb_000754_060 0.1120566716 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
17 Hb_001959_080 0.1123737711 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000554_020 0.1139139037 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
19 Hb_034722_010 0.1143822456 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Populus euphratica]
20 Hb_001030_120 0.1145284554 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001274_030 Hb_001274_030 Hb_001913_010 Hb_001913_010 Hb_001274_030--Hb_001913_010 Hb_001823_100 Hb_001823_100 Hb_001274_030--Hb_001823_100 Hb_000162_090 Hb_000162_090 Hb_001274_030--Hb_000162_090 Hb_000803_150 Hb_000803_150 Hb_001274_030--Hb_000803_150 Hb_007951_050 Hb_007951_050 Hb_001274_030--Hb_007951_050 Hb_000787_110 Hb_000787_110 Hb_001274_030--Hb_000787_110 Hb_001511_020 Hb_001511_020 Hb_001913_010--Hb_001511_020 Hb_002399_010 Hb_002399_010 Hb_001913_010--Hb_002399_010 Hb_004109_200 Hb_004109_200 Hb_001913_010--Hb_004109_200 Hb_010381_070 Hb_010381_070 Hb_001913_010--Hb_010381_070 Hb_001913_010--Hb_000162_090 Hb_012340_030 Hb_012340_030 Hb_001823_100--Hb_012340_030 Hb_001609_030 Hb_001609_030 Hb_001823_100--Hb_001609_030 Hb_000165_030 Hb_000165_030 Hb_001823_100--Hb_000165_030 Hb_000017_120 Hb_000017_120 Hb_001823_100--Hb_000017_120 Hb_007152_020 Hb_007152_020 Hb_001823_100--Hb_007152_020 Hb_000162_090--Hb_001511_020 Hb_003642_060 Hb_003642_060 Hb_000162_090--Hb_003642_060 Hb_000162_090--Hb_000803_150 Hb_000162_090--Hb_000165_030 Hb_000089_220 Hb_000089_220 Hb_000162_090--Hb_000089_220 Hb_001214_130 Hb_001214_130 Hb_000803_150--Hb_001214_130 Hb_000749_150 Hb_000749_150 Hb_000803_150--Hb_000749_150 Hb_041091_010 Hb_041091_010 Hb_000803_150--Hb_041091_010 Hb_000803_150--Hb_003642_060 Hb_185467_020 Hb_185467_020 Hb_000803_150--Hb_185467_020 Hb_000421_260 Hb_000421_260 Hb_007951_050--Hb_000421_260 Hb_000754_060 Hb_000754_060 Hb_007951_050--Hb_000754_060 Hb_002496_030 Hb_002496_030 Hb_007951_050--Hb_002496_030 Hb_001159_100 Hb_001159_100 Hb_007951_050--Hb_001159_100 Hb_015306_020 Hb_015306_020 Hb_007951_050--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_007951_050--Hb_028872_140 Hb_000188_100 Hb_000188_100 Hb_000787_110--Hb_000188_100 Hb_010710_110 Hb_010710_110 Hb_000787_110--Hb_010710_110 Hb_000554_020 Hb_000554_020 Hb_000787_110--Hb_000554_020 Hb_000406_220 Hb_000406_220 Hb_000787_110--Hb_000406_220 Hb_002810_020 Hb_002810_020 Hb_000787_110--Hb_002810_020 Hb_001488_330 Hb_001488_330 Hb_000787_110--Hb_001488_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8094 4.67651 2.40986 3.27371 6.8172 16.6878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.45317 11.513 13.2124 2.22065 2.43153

CAGE analysis