Hb_001276_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1276: 6876-11765
Sequence    

Annotation

kegg
ID egr:104417189
description putative disease resistance protein RGA3
nr
ID CBI21706.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6H4R2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0027g01490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001276_010 0.0 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
2 Hb_022452_010 0.1490329168 - - -
3 Hb_000317_090 0.1524513343 - - hypothetical protein RCOM_1176360 [Ricinus communis]
4 Hb_000176_060 0.1663569077 - - unnamed protein product [Vitis vinifera]
5 Hb_171659_010 0.1664682774 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
6 Hb_003772_080 0.1736181975 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
7 Hb_003222_010 0.1833260289 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_003816_020 0.1930469201 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
9 Hb_001935_190 0.2202535797 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
10 Hb_009189_030 0.2242641488 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
11 Hb_000559_050 0.2262645168 - - hypothetical protein JCGZ_20429 [Jatropha curcas]
12 Hb_002837_090 0.2330725384 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
13 Hb_004631_160 0.2376510443 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
14 Hb_003398_010 0.2377373464 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
15 Hb_000617_040 0.2460996422 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
16 Hb_000205_070 0.2485802965 - - kinase, putative [Ricinus communis]
17 Hb_000200_060 0.2506969494 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
18 Hb_004939_020 0.2532046896 - - gag/pol protein [Bryonia dioica]
19 Hb_041237_010 0.2574646459 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002026_230 0.262972991 - - hypothetical protein [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001276_010 Hb_001276_010 Hb_022452_010 Hb_022452_010 Hb_001276_010--Hb_022452_010 Hb_000317_090 Hb_000317_090 Hb_001276_010--Hb_000317_090 Hb_000176_060 Hb_000176_060 Hb_001276_010--Hb_000176_060 Hb_171659_010 Hb_171659_010 Hb_001276_010--Hb_171659_010 Hb_003772_080 Hb_003772_080 Hb_001276_010--Hb_003772_080 Hb_003222_010 Hb_003222_010 Hb_001276_010--Hb_003222_010 Hb_022452_010--Hb_000176_060 Hb_022452_010--Hb_171659_010 Hb_003816_020 Hb_003816_020 Hb_022452_010--Hb_003816_020 Hb_000205_070 Hb_000205_070 Hb_022452_010--Hb_000205_070 Hb_001951_120 Hb_001951_120 Hb_022452_010--Hb_001951_120 Hb_002837_090 Hb_002837_090 Hb_000317_090--Hb_002837_090 Hb_000317_090--Hb_003772_080 Hb_000317_090--Hb_171659_010 Hb_000317_090--Hb_022452_010 Hb_000317_090--Hb_003816_020 Hb_000176_060--Hb_000205_070 Hb_004631_160 Hb_004631_160 Hb_000176_060--Hb_004631_160 Hb_002326_060 Hb_002326_060 Hb_000176_060--Hb_002326_060 Hb_134732_010 Hb_134732_010 Hb_000176_060--Hb_134732_010 Hb_171659_010--Hb_003772_080 Hb_171659_010--Hb_003816_020 Hb_004939_020 Hb_004939_020 Hb_171659_010--Hb_004939_020 Hb_000559_050 Hb_000559_050 Hb_003772_080--Hb_000559_050 Hb_011909_090 Hb_011909_090 Hb_003772_080--Hb_011909_090 Hb_001589_070 Hb_001589_070 Hb_003772_080--Hb_001589_070 Hb_009189_030 Hb_009189_030 Hb_003222_010--Hb_009189_030 Hb_001935_190 Hb_001935_190 Hb_003222_010--Hb_001935_190 Hb_003222_010--Hb_004631_160 Hb_120662_010 Hb_120662_010 Hb_003222_010--Hb_120662_010 Hb_001916_060 Hb_001916_060 Hb_003222_010--Hb_001916_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.207815 0.108029 0 0.0168762 0.176854 0.174466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis