Hb_001277_010

Information

Type -
Description -
Location Contig1277: 5707-7628
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09040g
description hypothetical protein
nr
ID ABK94954.1
description unknown [Populus trichocarpa]
swissprot
ID O48780
description 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=2 SV=1
trembl
ID A9PF01
description 3-ketoacyl-CoA synthase OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08458: 5879-7253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_010 0.0 - - unknown [Populus trichocarpa]
2 Hb_001104_220 0.0906657288 - - PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
3 Hb_149507_010 0.0980463474 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
4 Hb_001269_660 0.1043876498 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
5 Hb_000635_100 0.1054471689 - - -
6 Hb_000941_110 0.1064341744 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_008441_010 0.1088818946 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
8 Hb_000639_010 0.1112854024 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
9 Hb_010264_010 0.1191346359 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
10 Hb_025623_010 0.1236961248 - - -
11 Hb_004804_010 0.1310681194 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
12 Hb_011709_010 0.1312233161 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
13 Hb_000017_140 0.1329087415 - - polygalacturonase, putative [Ricinus communis]
14 Hb_002001_030 0.1347460141 - - Plasma membrane ATPase 4 [Gossypium arboreum]
15 Hb_002370_020 0.1365658866 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
16 Hb_003968_030 0.140778347 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_041139_010 0.1415087008 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
18 Hb_032143_010 0.1431742931 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_000866_400 0.1439807658 - - -
20 Hb_012395_060 0.1449515149 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]

Gene co-expression network

sample Hb_001277_010 Hb_001277_010 Hb_001104_220 Hb_001104_220 Hb_001277_010--Hb_001104_220 Hb_149507_010 Hb_149507_010 Hb_001277_010--Hb_149507_010 Hb_001269_660 Hb_001269_660 Hb_001277_010--Hb_001269_660 Hb_000635_100 Hb_000635_100 Hb_001277_010--Hb_000635_100 Hb_000941_110 Hb_000941_110 Hb_001277_010--Hb_000941_110 Hb_008441_010 Hb_008441_010 Hb_001277_010--Hb_008441_010 Hb_005622_040 Hb_005622_040 Hb_001104_220--Hb_005622_040 Hb_008253_050 Hb_008253_050 Hb_001104_220--Hb_008253_050 Hb_041139_010 Hb_041139_010 Hb_001104_220--Hb_041139_010 Hb_032143_010 Hb_032143_010 Hb_001104_220--Hb_032143_010 Hb_001104_220--Hb_008441_010 Hb_002370_020 Hb_002370_020 Hb_149507_010--Hb_002370_020 Hb_149507_010--Hb_001269_660 Hb_012395_060 Hb_012395_060 Hb_149507_010--Hb_012395_060 Hb_025623_010 Hb_025623_010 Hb_149507_010--Hb_025623_010 Hb_000866_400 Hb_000866_400 Hb_149507_010--Hb_000866_400 Hb_001269_660--Hb_012395_060 Hb_010264_010 Hb_010264_010 Hb_001269_660--Hb_010264_010 Hb_121624_010 Hb_121624_010 Hb_001269_660--Hb_121624_010 Hb_002518_230 Hb_002518_230 Hb_001269_660--Hb_002518_230 Hb_001430_040 Hb_001430_040 Hb_000635_100--Hb_001430_040 Hb_003968_030 Hb_003968_030 Hb_000635_100--Hb_003968_030 Hb_000639_010 Hb_000639_010 Hb_000635_100--Hb_000639_010 Hb_000186_150 Hb_000186_150 Hb_000635_100--Hb_000186_150 Hb_010264_020 Hb_010264_020 Hb_000635_100--Hb_010264_020 Hb_004076_060 Hb_004076_060 Hb_000941_110--Hb_004076_060 Hb_005731_010 Hb_005731_010 Hb_000941_110--Hb_005731_010 Hb_012655_010 Hb_012655_010 Hb_000941_110--Hb_012655_010 Hb_001958_010 Hb_001958_010 Hb_000941_110--Hb_001958_010 Hb_003911_050 Hb_003911_050 Hb_000941_110--Hb_003911_050 Hb_005018_010 Hb_005018_010 Hb_000941_110--Hb_005018_010 Hb_000809_010 Hb_000809_010 Hb_008441_010--Hb_000809_010 Hb_000654_020 Hb_000654_020 Hb_008441_010--Hb_000654_020 Hb_008441_010--Hb_041139_010 Hb_008441_010--Hb_008253_050 Hb_002073_130 Hb_002073_130 Hb_008441_010--Hb_002073_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.388543 0.868758 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.205691 0.785789

CAGE analysis