Hb_001277_030

Information

Type -
Description -
Location Contig1277: 65602-69186
Sequence    

Annotation

kegg
ID tcc:TCM_026351
description GDP-mannose 3,5-epimerase 1
nr
ID XP_010274242.1
description PREDICTED: GDP-mannose 3,5-epimerase 2 [Nelumbo nucifera]
swissprot
ID A3C4S4
description GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1
trembl
ID A0A061F2D5
description GDP-mannose 3,5-epimerase 1 OS=Theobroma cacao GN=TCM_026351 PE=4 SV=1
Gene Ontology
ID GO:0005829
description gdp-mannose -epimerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08460: 65666-69203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_030 0.0 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Nelumbo nucifera]
2 Hb_002900_110 0.0924040289 - - amino acid transporter, putative [Ricinus communis]
3 Hb_005946_150 0.0955731062 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
4 Hb_028960_030 0.1048229067 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
5 Hb_001571_060 0.1057466107 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
6 Hb_012733_040 0.1073325242 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
7 Hb_000364_050 0.1096569377 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
8 Hb_002126_030 0.1100125237 - - ferrochelatase, putative [Ricinus communis]
9 Hb_000398_060 0.1107405424 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
10 Hb_011674_040 0.1125828647 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
11 Hb_001832_200 0.1138225859 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
12 Hb_134849_010 0.1171269883 - - ATP synthase subunit d, putative [Ricinus communis]
13 Hb_000076_210 0.1186715949 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
14 Hb_010863_050 0.1189371441 - - OTU domain-containing protein 6B, putative [Ricinus communis]
15 Hb_003040_040 0.1189565226 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
16 Hb_002301_100 0.1198872341 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
17 Hb_003440_020 0.1205499882 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_027402_130 0.1211580974 - - malate dehydrogenase, putative [Ricinus communis]
19 Hb_000510_340 0.1217736414 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
20 Hb_113853_010 0.122124379 - - 50S ribosomal protein L2, putative [Ricinus communis]

Gene co-expression network

sample Hb_001277_030 Hb_001277_030 Hb_002900_110 Hb_002900_110 Hb_001277_030--Hb_002900_110 Hb_005946_150 Hb_005946_150 Hb_001277_030--Hb_005946_150 Hb_028960_030 Hb_028960_030 Hb_001277_030--Hb_028960_030 Hb_001571_060 Hb_001571_060 Hb_001277_030--Hb_001571_060 Hb_012733_040 Hb_012733_040 Hb_001277_030--Hb_012733_040 Hb_000364_050 Hb_000364_050 Hb_001277_030--Hb_000364_050 Hb_000139_340 Hb_000139_340 Hb_002900_110--Hb_000139_340 Hb_000914_100 Hb_000914_100 Hb_002900_110--Hb_000914_100 Hb_002900_110--Hb_001571_060 Hb_094970_010 Hb_094970_010 Hb_002900_110--Hb_094970_010 Hb_000510_080 Hb_000510_080 Hb_002900_110--Hb_000510_080 Hb_001269_130 Hb_001269_130 Hb_005946_150--Hb_001269_130 Hb_008304_020 Hb_008304_020 Hb_005946_150--Hb_008304_020 Hb_006824_010 Hb_006824_010 Hb_005946_150--Hb_006824_010 Hb_002006_150 Hb_002006_150 Hb_005946_150--Hb_002006_150 Hb_000330_090 Hb_000330_090 Hb_005946_150--Hb_000330_090 Hb_011224_160 Hb_011224_160 Hb_028960_030--Hb_011224_160 Hb_003683_010 Hb_003683_010 Hb_028960_030--Hb_003683_010 Hb_000979_220 Hb_000979_220 Hb_028960_030--Hb_000979_220 Hb_011671_270 Hb_011671_270 Hb_028960_030--Hb_011671_270 Hb_011674_040 Hb_011674_040 Hb_028960_030--Hb_011674_040 Hb_021576_010 Hb_021576_010 Hb_028960_030--Hb_021576_010 Hb_005015_110 Hb_005015_110 Hb_001571_060--Hb_005015_110 Hb_180378_010 Hb_180378_010 Hb_001571_060--Hb_180378_010 Hb_004218_180 Hb_004218_180 Hb_001571_060--Hb_004218_180 Hb_000666_010 Hb_000666_010 Hb_001571_060--Hb_000666_010 Hb_002486_080 Hb_002486_080 Hb_001571_060--Hb_002486_080 Hb_000535_050 Hb_000535_050 Hb_001571_060--Hb_000535_050 Hb_001242_120 Hb_001242_120 Hb_012733_040--Hb_001242_120 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_002301_100 Hb_002301_100 Hb_012733_040--Hb_002301_100 Hb_012733_040--Hb_000364_050 Hb_004452_120 Hb_004452_120 Hb_012733_040--Hb_004452_120 Hb_003159_050 Hb_003159_050 Hb_012733_040--Hb_003159_050 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_000364_050--Hb_004452_120 Hb_000364_050--Hb_001269_130 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39487 2.12023 4.35499 2.73064 0.794943 1.28885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90416 2.78366 1.1322 4.44816 4.93219

CAGE analysis