Hb_001277_040

Information

Type -
Description -
Location Contig1277: 80169-82508
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15960g
description POPTRDRAFT_720965; hypothetical protein
nr
ID XP_012069736.1
description PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZ95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02256 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_040 0.0 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
2 Hb_003226_110 0.1249508037 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
3 Hb_001195_350 0.1274312322 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
4 Hb_000661_280 0.1339772149 - - PREDICTED: protein TRAUCO [Jatropha curcas]
5 Hb_000950_040 0.1400755181 - - cation-transporting atpase plant, putative [Ricinus communis]
6 Hb_005649_090 0.1435914205 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
7 Hb_000270_110 0.1525190992 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
8 Hb_001675_010 0.1539623266 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
9 Hb_008112_010 0.1559376967 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
10 Hb_002781_010 0.1571823779 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
11 Hb_004631_110 0.1588788865 - - ring finger protein, putative [Ricinus communis]
12 Hb_000371_060 0.1598053658 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
13 Hb_002524_020 0.1599443864 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
14 Hb_052117_010 0.1606029934 - - kinase, putative [Ricinus communis]
15 Hb_000840_070 0.1631473122 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_000242_030 0.1657329987 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
17 Hb_003849_220 0.1668896851 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
18 Hb_001085_300 0.1675101467 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
19 Hb_011689_100 0.167632591 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
20 Hb_000866_080 0.1688509395 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_040 Hb_001277_040 Hb_003226_110 Hb_003226_110 Hb_001277_040--Hb_003226_110 Hb_001195_350 Hb_001195_350 Hb_001277_040--Hb_001195_350 Hb_000661_280 Hb_000661_280 Hb_001277_040--Hb_000661_280 Hb_000950_040 Hb_000950_040 Hb_001277_040--Hb_000950_040 Hb_005649_090 Hb_005649_090 Hb_001277_040--Hb_005649_090 Hb_000270_110 Hb_000270_110 Hb_001277_040--Hb_000270_110 Hb_004195_120 Hb_004195_120 Hb_003226_110--Hb_004195_120 Hb_003226_110--Hb_005649_090 Hb_004310_040 Hb_004310_040 Hb_003226_110--Hb_004310_040 Hb_000866_080 Hb_000866_080 Hb_003226_110--Hb_000866_080 Hb_001484_100 Hb_001484_100 Hb_003226_110--Hb_001484_100 Hb_002477_120 Hb_002477_120 Hb_003226_110--Hb_002477_120 Hb_000371_060 Hb_000371_060 Hb_001195_350--Hb_000371_060 Hb_010068_070 Hb_010068_070 Hb_001195_350--Hb_010068_070 Hb_004631_110 Hb_004631_110 Hb_001195_350--Hb_004631_110 Hb_000840_070 Hb_000840_070 Hb_001195_350--Hb_000840_070 Hb_033363_010 Hb_033363_010 Hb_001195_350--Hb_033363_010 Hb_002524_020 Hb_002524_020 Hb_001195_350--Hb_002524_020 Hb_008112_010 Hb_008112_010 Hb_000661_280--Hb_008112_010 Hb_011689_100 Hb_011689_100 Hb_000661_280--Hb_011689_100 Hb_000638_150 Hb_000638_150 Hb_000661_280--Hb_000638_150 Hb_000661_280--Hb_000840_070 Hb_004667_040 Hb_004667_040 Hb_000661_280--Hb_004667_040 Hb_000732_230 Hb_000732_230 Hb_000950_040--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_000950_040--Hb_052117_010 Hb_000227_320 Hb_000227_320 Hb_000950_040--Hb_000227_320 Hb_000196_010 Hb_000196_010 Hb_000950_040--Hb_000196_010 Hb_006949_060 Hb_006949_060 Hb_000950_040--Hb_006949_060 Hb_115513_040 Hb_115513_040 Hb_000950_040--Hb_115513_040 Hb_005649_090--Hb_004195_120 Hb_000056_300 Hb_000056_300 Hb_005649_090--Hb_000056_300 Hb_001009_090 Hb_001009_090 Hb_005649_090--Hb_001009_090 Hb_002903_140 Hb_002903_140 Hb_005649_090--Hb_002903_140 Hb_030545_030 Hb_030545_030 Hb_005649_090--Hb_030545_030 Hb_007031_040 Hb_007031_040 Hb_000270_110--Hb_007031_040 Hb_000421_110 Hb_000421_110 Hb_000270_110--Hb_000421_110 Hb_001133_090 Hb_001133_090 Hb_000270_110--Hb_001133_090 Hb_000270_110--Hb_005649_090 Hb_001911_010 Hb_001911_010 Hb_000270_110--Hb_001911_010 Hb_000941_080 Hb_000941_080 Hb_000270_110--Hb_000941_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9469 42.2288 24.1928 26.0943 4.18613 7.35377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.52779 3.22758 2.03064 16.5242 10.9875

CAGE analysis