Hb_001277_050

Information

Type -
Description -
Location Contig1277: 90346-96471
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15950g
description POPTRDRAFT_832826; pyruvate phosphotransferase family protein
nr
ID XP_012069735.1
description PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
swissprot
ID Q43117
description Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1
trembl
ID A0A067KVP9
description Pyruvate kinase OS=Jatropha curcas GN=JCGZ_02254 PE=3 SV=1
Gene Ontology
ID GO:0009507
description pyruvate kinase isozyme chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08462: 90347-96486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_050 0.0 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
2 Hb_001269_620 0.0601591736 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
3 Hb_005686_130 0.0815866376 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
4 Hb_001147_050 0.0984387065 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
5 Hb_000088_260 0.1007826366 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
6 Hb_000638_130 0.1032215564 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
7 Hb_002534_130 0.1036022351 - - membrane associated ring finger 1,8, putative [Ricinus communis]
8 Hb_000035_350 0.1046058954 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
9 Hb_001571_060 0.1049121642 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
10 Hb_002232_430 0.1062516652 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
11 Hb_000358_020 0.1086395427 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
12 Hb_000510_170 0.109668398 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
13 Hb_049575_010 0.1109930216 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
14 Hb_002615_030 0.1116628783 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
15 Hb_003440_020 0.1118309089 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_000330_090 0.1163051108 - - ornithine carbamoyltransferase, putative [Ricinus communis]
17 Hb_002259_170 0.1166898727 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
18 Hb_006637_030 0.117137381 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
19 Hb_007416_110 0.1182408818 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
20 Hb_000235_070 0.1192529065 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_050 Hb_001277_050 Hb_001269_620 Hb_001269_620 Hb_001277_050--Hb_001269_620 Hb_005686_130 Hb_005686_130 Hb_001277_050--Hb_005686_130 Hb_001147_050 Hb_001147_050 Hb_001277_050--Hb_001147_050 Hb_000088_260 Hb_000088_260 Hb_001277_050--Hb_000088_260 Hb_000638_130 Hb_000638_130 Hb_001277_050--Hb_000638_130 Hb_002534_130 Hb_002534_130 Hb_001277_050--Hb_002534_130 Hb_001269_620--Hb_005686_130 Hb_001269_620--Hb_000088_260 Hb_049575_010 Hb_049575_010 Hb_001269_620--Hb_049575_010 Hb_001269_620--Hb_001147_050 Hb_000235_070 Hb_000235_070 Hb_001269_620--Hb_000235_070 Hb_005686_130--Hb_000638_130 Hb_005686_130--Hb_002534_130 Hb_000510_170 Hb_000510_170 Hb_005686_130--Hb_000510_170 Hb_005686_130--Hb_000088_260 Hb_000330_090 Hb_000330_090 Hb_001147_050--Hb_000330_090 Hb_002693_030 Hb_002693_030 Hb_001147_050--Hb_002693_030 Hb_002232_430 Hb_002232_430 Hb_001147_050--Hb_002232_430 Hb_006637_030 Hb_006637_030 Hb_001147_050--Hb_006637_030 Hb_000270_480 Hb_000270_480 Hb_000088_260--Hb_000270_480 Hb_000128_060 Hb_000128_060 Hb_000088_260--Hb_000128_060 Hb_001511_090 Hb_001511_090 Hb_000088_260--Hb_001511_090 Hb_001117_110 Hb_001117_110 Hb_000088_260--Hb_001117_110 Hb_001141_240 Hb_001141_240 Hb_000088_260--Hb_001141_240 Hb_000025_350 Hb_000025_350 Hb_000638_130--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000638_130--Hb_001014_060 Hb_000638_130--Hb_000510_170 Hb_003913_130 Hb_003913_130 Hb_000638_130--Hb_003913_130 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010 Hb_002534_130--Hb_002693_030 Hb_000193_260 Hb_000193_260 Hb_002534_130--Hb_000193_260 Hb_002534_130--Hb_001269_620 Hb_015778_040 Hb_015778_040 Hb_002534_130--Hb_015778_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01842 6.61749 10.2277 7.61371 1.1046 1.2491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.95999 6.44198 4.96842 7.45497 9.88923

CAGE analysis