Hb_001277_070

Information

Type -
Description -
Location Contig1277: 102932-107002
Sequence    

Annotation

kegg
ID rcu:RCOM_0910700
description hypothetical protein
nr
ID XP_012069733.1
description PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
swissprot
ID Q93V47
description Guanine nucleotide-binding protein subunit gamma 2 OS=Arabidopsis thaliana GN=GG2 PE=1 SV=1
trembl
ID B9RTH7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0910700 PE=4 SV=1
Gene Ontology
ID GO:0005834
description guanine nucleotide-binding protein subunit gamma 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08463: 103378-107296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_070 0.0 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
2 Hb_012505_010 0.0667932952 - - mak, putative [Ricinus communis]
3 Hb_000608_370 0.0700190772 - - acyl-carrier-protein [Triadica sebifera]
4 Hb_011224_110 0.071115916 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
5 Hb_129204_030 0.0737065449 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
6 Hb_003581_150 0.0830500689 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
7 Hb_153112_020 0.0830645701 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
8 Hb_000270_270 0.0863738051 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
9 Hb_004931_090 0.086672865 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
10 Hb_007416_030 0.0879183041 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
11 Hb_003607_150 0.0888660281 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
12 Hb_000331_080 0.0909810433 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
13 Hb_048476_110 0.0921111032 - - PREDICTED: adagio protein 3 [Jatropha curcas]
14 Hb_165132_010 0.095026129 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
15 Hb_112798_030 0.0958670396 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002454_030 0.0968164478 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
17 Hb_000201_120 0.0971219979 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
18 Hb_007432_030 0.0974940689 - - acyl-CoA thioesterase, putative [Ricinus communis]
19 Hb_001832_060 0.0979612873 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
20 Hb_000240_090 0.0986153613 - - Rab5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001277_070 Hb_001277_070 Hb_012505_010 Hb_012505_010 Hb_001277_070--Hb_012505_010 Hb_000608_370 Hb_000608_370 Hb_001277_070--Hb_000608_370 Hb_011224_110 Hb_011224_110 Hb_001277_070--Hb_011224_110 Hb_129204_030 Hb_129204_030 Hb_001277_070--Hb_129204_030 Hb_003581_150 Hb_003581_150 Hb_001277_070--Hb_003581_150 Hb_153112_020 Hb_153112_020 Hb_001277_070--Hb_153112_020 Hb_004375_140 Hb_004375_140 Hb_012505_010--Hb_004375_140 Hb_012505_010--Hb_129204_030 Hb_000240_090 Hb_000240_090 Hb_012505_010--Hb_000240_090 Hb_012505_010--Hb_000608_370 Hb_001140_060 Hb_001140_060 Hb_012505_010--Hb_001140_060 Hb_000608_370--Hb_129204_030 Hb_007416_030 Hb_007416_030 Hb_000608_370--Hb_007416_030 Hb_001047_230 Hb_001047_230 Hb_000608_370--Hb_001047_230 Hb_000788_090 Hb_000788_090 Hb_000608_370--Hb_000788_090 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030 Hb_011224_110--Hb_153112_020 Hb_004657_050 Hb_004657_050 Hb_011224_110--Hb_004657_050 Hb_002163_020 Hb_002163_020 Hb_011224_110--Hb_002163_020 Hb_000331_080 Hb_000331_080 Hb_011224_110--Hb_000331_080 Hb_005539_350 Hb_005539_350 Hb_011224_110--Hb_005539_350 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_129204_030--Hb_001047_230 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_129204_030--Hb_000240_090 Hb_000201_120 Hb_000201_120 Hb_003581_150--Hb_000201_120 Hb_000103_320 Hb_000103_320 Hb_003581_150--Hb_000103_320 Hb_000934_250 Hb_000934_250 Hb_003581_150--Hb_000934_250 Hb_002830_020 Hb_002830_020 Hb_003581_150--Hb_002830_020 Hb_010175_040 Hb_010175_040 Hb_003581_150--Hb_010175_040 Hb_003581_150--Hb_129204_030 Hb_153112_020--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_153112_020--Hb_000840_030 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.6004 11.9527 28.2499 15.4548 26.4805 21.4813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.3968 60.4762 50.9003 9.99181 15.7563

CAGE analysis