Hb_001277_100

Information

Type -
Description -
Location Contig1277: 118185-121018
Sequence    

Annotation

kegg
ID tcc:TCM_020733
description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
nr
ID XP_012481925.1
description PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
swissprot
ID P23525
description 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic OS=Spinacia oleracea PE=1 SV=1
trembl
ID S8C3B0
description 2-methyl-6-phytylbenzoquinone methyltransferase (Fragment) OS=Genlisea aurea GN=M569_13653 PE=4 SV=1
Gene Ontology
ID GO:0019031
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08467: 118826-119232 , PASA_asmbl_08468: 117922-121004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_100 0.0 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
2 Hb_000107_430 0.0830636782 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
3 Hb_000811_070 0.0871151498 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
4 Hb_006907_060 0.08829897 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
5 Hb_007192_030 0.0895842677 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
6 Hb_011671_260 0.0907457898 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
7 Hb_000086_080 0.0943932738 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000167_110 0.0947844116 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
9 Hb_000487_260 0.0957645269 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
10 Hb_007741_110 0.0960156959 - - -
11 Hb_000340_150 0.0967825212 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
12 Hb_000941_100 0.097710534 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
13 Hb_003053_110 0.098204035 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
14 Hb_006846_150 0.0995978936 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001195_770 0.1008215531 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
16 Hb_003266_030 0.101005941 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
17 Hb_007904_230 0.10147953 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
18 Hb_000926_080 0.1016829392 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
19 Hb_001369_790 0.1018568383 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
20 Hb_000317_260 0.1022249837 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_001277_100 Hb_001277_100 Hb_000107_430 Hb_000107_430 Hb_001277_100--Hb_000107_430 Hb_000811_070 Hb_000811_070 Hb_001277_100--Hb_000811_070 Hb_006907_060 Hb_006907_060 Hb_001277_100--Hb_006907_060 Hb_007192_030 Hb_007192_030 Hb_001277_100--Hb_007192_030 Hb_011671_260 Hb_011671_260 Hb_001277_100--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_001277_100--Hb_000086_080 Hb_002762_110 Hb_002762_110 Hb_000107_430--Hb_002762_110 Hb_003053_110 Hb_003053_110 Hb_000107_430--Hb_003053_110 Hb_007741_110 Hb_007741_110 Hb_000107_430--Hb_007741_110 Hb_000107_430--Hb_007192_030 Hb_000167_110 Hb_000167_110 Hb_000107_430--Hb_000167_110 Hb_004644_030 Hb_004644_030 Hb_000107_430--Hb_004644_030 Hb_006846_150 Hb_006846_150 Hb_000811_070--Hb_006846_150 Hb_008421_020 Hb_008421_020 Hb_000811_070--Hb_008421_020 Hb_000487_260 Hb_000487_260 Hb_000811_070--Hb_000487_260 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_005167_010 Hb_005167_010 Hb_000811_070--Hb_005167_010 Hb_002631_240 Hb_002631_240 Hb_006907_060--Hb_002631_240 Hb_000941_100 Hb_000941_100 Hb_006907_060--Hb_000941_100 Hb_006907_060--Hb_003053_110 Hb_073973_090 Hb_073973_090 Hb_006907_060--Hb_073973_090 Hb_008705_020 Hb_008705_020 Hb_006907_060--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_006907_060--Hb_001195_770 Hb_001369_790 Hb_001369_790 Hb_007192_030--Hb_001369_790 Hb_007192_030--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_007192_030--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_007192_030--Hb_000622_290 Hb_007192_030--Hb_007904_230 Hb_004951_060 Hb_004951_060 Hb_007192_030--Hb_004951_060 Hb_003266_030 Hb_003266_030 Hb_011671_260--Hb_003266_030 Hb_011671_260--Hb_002631_240 Hb_011671_260--Hb_073973_090 Hb_011671_260--Hb_000167_110 Hb_011671_260--Hb_006907_060 Hb_004965_110 Hb_004965_110 Hb_011671_260--Hb_004965_110 Hb_000086_080--Hb_073973_090 Hb_000086_080--Hb_003266_030 Hb_000086_080--Hb_011671_260 Hb_000023_360 Hb_000023_360 Hb_000086_080--Hb_000023_360 Hb_000086_080--Hb_003053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.0996 4.58504 18.1069 13.6184 5.56465 4.58167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.80484 12.4182 11.05 4.97519 24.1394

CAGE analysis