Hb_001277_130

Information

Type -
Description -
Location Contig1277: 129437-133768
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15900g
description POPTRDRAFT_564896; hypothetical protein
nr
ID XP_012069934.1
description PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZ87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02246 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08471: 129261-129473 , PASA_asmbl_08473: 130006-130447 , PASA_asmbl_08476: 131702-132417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_130 0.0 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
2 Hb_028491_010 0.0558247837 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
3 Hb_008847_050 0.0560861273 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001141_100 0.0607530302 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
5 Hb_147028_010 0.0675906137 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
6 Hb_002259_090 0.0685869503 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
7 Hb_004607_110 0.0725686748 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
8 Hb_000418_130 0.072665742 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
9 Hb_004338_050 0.0728551096 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
10 Hb_001735_040 0.0759146432 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
11 Hb_009193_070 0.0781147726 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
12 Hb_003025_160 0.0789966157 - - Protein HVA22, putative [Ricinus communis]
13 Hb_000042_280 0.0799696367 - - chlorophyll A/B binding protein, putative [Ricinus communis]
14 Hb_001199_110 0.0816531059 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
15 Hb_008225_050 0.0817344424 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
16 Hb_002752_020 0.0825507637 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
17 Hb_006615_090 0.0829870538 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
18 Hb_001999_230 0.0837978116 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
19 Hb_001007_070 0.0844623173 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
20 Hb_146255_030 0.0856545029 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001277_130 Hb_001277_130 Hb_028491_010 Hb_028491_010 Hb_001277_130--Hb_028491_010 Hb_008847_050 Hb_008847_050 Hb_001277_130--Hb_008847_050 Hb_001141_100 Hb_001141_100 Hb_001277_130--Hb_001141_100 Hb_147028_010 Hb_147028_010 Hb_001277_130--Hb_147028_010 Hb_002259_090 Hb_002259_090 Hb_001277_130--Hb_002259_090 Hb_004607_110 Hb_004607_110 Hb_001277_130--Hb_004607_110 Hb_028491_010--Hb_004607_110 Hb_028491_010--Hb_001141_100 Hb_029991_010 Hb_029991_010 Hb_028491_010--Hb_029991_010 Hb_028491_010--Hb_008847_050 Hb_028491_010--Hb_147028_010 Hb_008847_050--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_008847_050--Hb_009193_070 Hb_008847_050--Hb_001141_100 Hb_003025_160 Hb_003025_160 Hb_008847_050--Hb_003025_160 Hb_001141_100--Hb_147028_010 Hb_001141_100--Hb_004607_110 Hb_001141_100--Hb_009193_070 Hb_000803_080 Hb_000803_080 Hb_147028_010--Hb_000803_080 Hb_086300_010 Hb_086300_010 Hb_147028_010--Hb_086300_010 Hb_001735_040 Hb_001735_040 Hb_147028_010--Hb_001735_040 Hb_001007_070 Hb_001007_070 Hb_002259_090--Hb_001007_070 Hb_002259_090--Hb_003025_160 Hb_001999_230 Hb_001999_230 Hb_002259_090--Hb_001999_230 Hb_005054_120 Hb_005054_120 Hb_002259_090--Hb_005054_120 Hb_004607_110--Hb_029991_010 Hb_131466_010 Hb_131466_010 Hb_004607_110--Hb_131466_010 Hb_004607_110--Hb_001735_040 Hb_004607_110--Hb_000803_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.179309 1.77571 1.63773 0 0.00531335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0207796 0.0129119 3.22181

CAGE analysis