Hb_001277_140

Information

Type -
Description -
Location Contig1277: 141689-142591
Sequence    

Annotation

kegg
ID dosa:Os08t0517200-01
description Os08g0517200; Similar to autoinhibited calcium ATPase.
nr
ID XP_003977272.2
description PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
swissprot
ID -
description -
trembl
ID A0A0E0BF34
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_140 0.0 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
2 Hb_088084_010 0.1521269609 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
3 Hb_001529_030 0.1891189456 - - hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
4 Hb_002760_060 0.1943215707 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
5 Hb_001922_160 0.2012874732 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
6 Hb_131956_010 0.2016582021 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
7 Hb_003053_060 0.2024297018 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
8 Hb_002641_100 0.2095105319 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
9 Hb_015978_030 0.218762196 - - Zinc finger protein GIS2 [Medicago truncatula]
10 Hb_001514_040 0.2216232928 - - l-asparaginase, putative [Ricinus communis]
11 Hb_002217_270 0.2247455188 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
12 Hb_136886_010 0.2258452348 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_003095_050 0.2259512215 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
14 Hb_127819_010 0.2259798007 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_013057_030 0.2260835547 - - conserved hypothetical protein [Ricinus communis]
16 Hb_059580_010 0.2270773425 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
17 Hb_000700_100 0.2292412681 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
18 Hb_001565_120 0.2377726002 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
19 Hb_138575_010 0.2394970296 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_012760_180 0.2399227064 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001277_140 Hb_001277_140 Hb_088084_010 Hb_088084_010 Hb_001277_140--Hb_088084_010 Hb_001529_030 Hb_001529_030 Hb_001277_140--Hb_001529_030 Hb_002760_060 Hb_002760_060 Hb_001277_140--Hb_002760_060 Hb_001922_160 Hb_001922_160 Hb_001277_140--Hb_001922_160 Hb_131956_010 Hb_131956_010 Hb_001277_140--Hb_131956_010 Hb_003053_060 Hb_003053_060 Hb_001277_140--Hb_003053_060 Hb_002217_270 Hb_002217_270 Hb_088084_010--Hb_002217_270 Hb_136886_010 Hb_136886_010 Hb_088084_010--Hb_136886_010 Hb_000960_010 Hb_000960_010 Hb_088084_010--Hb_000960_010 Hb_143863_010 Hb_143863_010 Hb_088084_010--Hb_143863_010 Hb_088084_010--Hb_131956_010 Hb_000813_080 Hb_000813_080 Hb_001529_030--Hb_000813_080 Hb_082219_010 Hb_082219_010 Hb_001529_030--Hb_082219_010 Hb_012760_180 Hb_012760_180 Hb_001529_030--Hb_012760_180 Hb_152764_010 Hb_152764_010 Hb_001529_030--Hb_152764_010 Hb_023024_010 Hb_023024_010 Hb_001529_030--Hb_023024_010 Hb_033153_010 Hb_033153_010 Hb_002760_060--Hb_033153_010 Hb_000414_100 Hb_000414_100 Hb_002760_060--Hb_000414_100 Hb_174829_040 Hb_174829_040 Hb_002760_060--Hb_174829_040 Hb_001277_150 Hb_001277_150 Hb_002760_060--Hb_001277_150 Hb_001514_040 Hb_001514_040 Hb_002760_060--Hb_001514_040 Hb_011671_290 Hb_011671_290 Hb_002760_060--Hb_011671_290 Hb_001922_160--Hb_001514_040 Hb_001922_160--Hb_002760_060 Hb_003893_020 Hb_003893_020 Hb_001922_160--Hb_003893_020 Hb_003442_050 Hb_003442_050 Hb_001922_160--Hb_003442_050 Hb_013057_030 Hb_013057_030 Hb_001922_160--Hb_013057_030 Hb_001922_160--Hb_001277_150 Hb_002235_240 Hb_002235_240 Hb_131956_010--Hb_002235_240 Hb_022137_040 Hb_022137_040 Hb_131956_010--Hb_022137_040 Hb_129204_060 Hb_129204_060 Hb_131956_010--Hb_129204_060 Hb_009838_060 Hb_009838_060 Hb_131956_010--Hb_009838_060 Hb_004800_190 Hb_004800_190 Hb_131956_010--Hb_004800_190 Hb_004724_130 Hb_004724_130 Hb_131956_010--Hb_004724_130 Hb_015978_030 Hb_015978_030 Hb_003053_060--Hb_015978_030 Hb_000142_010 Hb_000142_010 Hb_003053_060--Hb_000142_010 Hb_003053_060--Hb_174829_040 Hb_004324_290 Hb_004324_290 Hb_003053_060--Hb_004324_290 Hb_002835_260 Hb_002835_260 Hb_003053_060--Hb_002835_260 Hb_003053_060--Hb_136886_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49973 19.399 0.249508 0.75166 0.248782 0.354584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.288197 0.362628 0.414156 0.310719 0.0920023

CAGE analysis